RNA id: AMCG00007062


Basic Information

Item Value
RNA id AMCG00007062
length 1458
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00007062
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2290403 ~ 2297881 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGACAAGCTGAGTGATGCCAGCGACACCAGGAACACCAGAGCCGACAGCGTTGAAACGTCGGAGCAGTCTCTGAGGAAGAGGAGTCGCCAGAGTACCCCCAGCCCTCAAAGGGCCAACACACCGCAGTCCAGTCCTCCCAGATTTGTGTCAGTGGAGGAGCTGATGGAGACGGCCAAGGGTGTGACCAACATGGCGCTGGCGCACGAGATTGTGGTGAACGGGGGCTTCAAGGTGAAACCCACCAACTTGGCAGACGGCAGTTTGGAAAAAACAGTGCGGGATATTGTGcacaaagcattctgggattgcCTGGATGCACAGCTGAGTGAAGACCCTCCAACATACGATCATGCAATCAAGCTGCtgggagagatcaaggagACGCTGCTGTCATTCTTGCTTCCGGGACACACTCGTCTGCGGAACCAGATCAACGAGGTTCTGGATCTGGAGCTGATCCGACAGGAGGCGGAGAACGGGGCGCTAGATATCAACAAGCTTGCAGAGTTTGTCATCGGCATGATGGGGACGCTGTGCGCGCCGTCCCGGGACCAGGAGATCAAGAAGCTGCGCAGCATCACCGTCATCGTGCCGCTGTTCAAGGCAATCTTCTCAGTAATGGATTTAATGAAGATTGACATGGCTAATTTTGCACTTTCCACAGATGCCTTGGACTTCACTCGAGCGTGGCTCCACAACACGGCGAATGCTCTGCTCAACGCAGACGTGGAGGTCAGCCCCTCTGGTGCCGGCGCCACCTGCAGCCCCCCGGCGCTCTGTCCTACCTCCCTGCACAACCGTGCCTACCTGAACCTGCTGCAGTGGGACCACACCAGCGCCCCCTTCCCCGAAACTCTGCTAATGGACGAGACTCGGTTTCAAGAAATGCACAtggagctggagcagctgaCGGTCATAGCCGCAGTGCTGTTGATCACGTACAACATCACCGGGGCAGCGATCTCCGGCCTCTCGGGGTTCGCTGAGAAACTCAAGAACACAATCAAGGTGTTGTTGACGGGAATGCATCATCCCTCCTTTAACACCAGCGAGGCCTTTGCTACAATTAGCGAGAAGATATGTGTGGAAGTCAATAGCTGCCTATCGCAACATGGGTTCACGCCGTTTTCTGCTGACAAAGAGGCTGTGTTGAAAGGACAGATTGACGCAGTGAAAAATTCAGACAATTCCATCCGCAAACTCATCGATTCTCGCATTCAAACCTTTCTAATGGGCTACCTTGACTCCAGCCACCAGAAACCCAGCACTGCAGTACCAGGGGGTCTGGTTCCCATTCAGAGAGAACTGGAGGAGATTGCAGTCAAATTCAGCCGCCTGGTCAACTACAACAAAATGGTCTTTTCCCCGTACTACGAGCAAATCCTCAAGGAGATTCTCAGCGAGGGAGAGCAGCAGGAAAAAAAGCTGGACAAGGACGAAGACCAGCGGATCTTT

Function

GO: NA

KEGG:

id description
ko04138 Autophagy - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26123 lncRNA downstream 1785 2286824 ~ 2288618 (-) True G20914
TU26116 lncRNA downstream 35843 2200053 ~ 2254560 (-) True G20908
TU26063 lncRNA downstream 117920 2171904 ~ 2172483 (-) True G20870
TU25945 lncRNA downstream 559924 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 563236 1722556 ~ 1727167 (-) True G20802
TU26162 lncRNA upstream 129278 2427159 ~ 2427421 (-) True G20947
TU26186 lncRNA upstream 250123 2548004 ~ 2548289 (-) True G20965
TU26198 lncRNA upstream 331216 2629097 ~ 2637796 (-) True G20976
TU26204 lncRNA upstream 347024 2644905 ~ 2663649 (-) True AMCG00007072
TU26258 lncRNA upstream 604681 2902562 ~ 2903620 (-) True G21020
AMCG00007057 mRNA downstream 45971 2238167 ~ 2244432 (-) True AMCG00007057
AMCG00007058 mRNA downstream 72258 2205128 ~ 2218145 (-) True AMCG00007058
AMCG00007059 mRNA downstream 93548 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007060 mRNA downstream 365520 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007052 mRNA downstream 428230 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007063 mRNA upstream 4502 2302383 ~ 2310199 (-) True AMCG00007063
AMCG00007065 mRNA upstream 28731 2326612 ~ 2346701 (-) True AMCG00007065
AMCG00007066 mRNA upstream 52157 2350038 ~ 2363800 (-) True AMCG00007066
AMCG00007067 mRNA upstream 78255 2376136 ~ 2382023 (-) True AMCG00007067
AMCG00007070 mRNA upstream 164273 2462154 ~ 2475341 (-) True AMCG00007070
TU26061 other downstream 119833 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 144588 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1337341 952236 ~ 953062 (-) True G20630
TU25699 other downstream 1442114 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2743778 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2744639 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2758906 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3518928 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3709759 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile