RNA id: AMCG00007063


Basic Information

Item Value
RNA id AMCG00007063
length 1657
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00007063
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2302383 ~ 2310199 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACAGACCCCCGGCAGAGCACAGCATGGCACATAAGCCATTCAGAGCCACGTTTATTTGGAGCAGCATCATCAACCACCTCGAGACGCAAGTGGAGGTGAAAAGGCGACGGCACAACCTGAAATACCACAATGACTGCTTCGTCGGCTCCGAAGCCGTGGACGTCATCTTGGCTCACGTCATACAGAACAAGTTCTTCGGCGACGCAGACATTCCCAGGGCCAAAGTGGTGCGCGTCTGTCAAGCCCTCATGGAATATAAGGTGTTTGAAGCGGTTGGCACCAAGGTGTTTGGCAAAGAGAAGAAGCGGGCGGCGTTTGAGGACAGCAGTTGCAGCTTGTATAGGTTCCTGAATGCGTCACCCCCAACGGCAAACAATCTTGATAATGGAAGTGCTTCCCCAAGTTATCAACGAACTGTATACAGTAGGACTTGCAGAAGACAAGAAGAAATTGAGTATTCCTCTGCCACCCCTGGCAAAACAGACCAGTCTTTAGAAGATCTTTTGGATAACTTAAATCTGAATCCTACAAATGCATCTCAACTGAAAGTAAATCCAGGATTGCCCGAGAACCTTGTTAATGAAGTGTGGCATGAGCAAACTGTCCTGCGCCTGCTACAGCTGGTCGAGCTCCCCTTGCTTGATACCTTGCTGGAGGGGAGAGAAGCTGAGCCACCACTGAGGAGTGTTGACAGCGACCCTGATCTGCTCCTAACCAGCAACTACCTGGACCGAGAGATCCTCAAGGCCTTCGGTGACTCTCAGGCTGATGCCTGGCTGTCTGCAGCCGTGGACTGTCTGGAGTTCCTGCCGGACCAGATGGTTGTGGAAGTGAGCCGGAGTCTGCCCAAATGCTCCGATGAGTCACAGCAGTGCAAGAGGCTGCTGTACGACACGATTGTCAAACACTACAGCCAAAACCGGGAGCCTCTCCTCACCAACCATTTGTTCGATATACACACTGGAATTGCTGAGCTCCTTGTGAATGGGAAGCTGGAACAGGCCCTGGAAGCGCTacagctgtgcttgaagctgctGGACTCCCGGAGCAGAGAGGAGTTGCGCAGGCTGCTGTGCTTCATGGCGGCAGCTGCAAAGTCTGGTGAAGTCAAACTGCACAAAGAGGTACAAATCGAGAACAGAATGGCTGTTAAAAGGTCGTTCAGCAAAGCGATTGTCCTCAGTAAGAATCTAGCAAAAGGAAAGGTGGATCTTCTTGTGCTTTTTCTACTTGACAACCAAAAAGATGTGTTCAAGatcCCAGGATCTTTGCATAAACTTGTCAGTGATAAGTTGGCGTACATTATACGTGGGAATGACCCCGACTTGGCTGCAGGCTCCACTTTCTGTCAGAGGGTATCTAGCCAGGACTACTCCGAAAGTgcaaagaaaaccacaaaagaGGAGCTGTGGGCCTTGCTCAGGACAATCCACGAGAACCCAAAGCTttctacaaaagaaaagaaacgctTGCTTGGCCAGTTCTATAAGAGCCACCCTGacatttttatacaatattttggaaaccGAACATCTAATATCTATGTGTAACTATAAAACTACTGtatatgttgtaaaattgtataaatgtcttgtatttactgtatgtacATGTGTAAAGGTGaattattaaatgctttttattatcttttaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26123 lncRNA downstream 13765 2286824 ~ 2288618 (-) True G20914
TU26116 lncRNA downstream 47823 2200053 ~ 2254560 (-) True G20908
TU26063 lncRNA downstream 129900 2171904 ~ 2172483 (-) True G20870
TU25945 lncRNA downstream 571904 1676304 ~ 1730479 (-) True G20795
TU26162 lncRNA upstream 116960 2427159 ~ 2427421 (-) True G20947
TU26186 lncRNA upstream 237805 2548004 ~ 2548289 (-) True G20965
TU26198 lncRNA upstream 318898 2629097 ~ 2637796 (-) True G20976
TU26204 lncRNA upstream 334706 2644905 ~ 2663649 (-) True AMCG00007072
TU26258 lncRNA upstream 592363 2902562 ~ 2903620 (-) True G21020
AMCG00007062 mRNA downstream 4502 2290403 ~ 2297881 (-) True AMCG00007062
AMCG00007057 mRNA downstream 57951 2238167 ~ 2244432 (-) True AMCG00007057
AMCG00007058 mRNA downstream 84238 2205128 ~ 2218145 (-) True AMCG00007058
AMCG00007059 mRNA downstream 105528 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007060 mRNA downstream 377500 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007065 mRNA upstream 16413 2326612 ~ 2346701 (-) True AMCG00007065
AMCG00007066 mRNA upstream 39839 2350038 ~ 2363800 (-) True AMCG00007066
AMCG00007067 mRNA upstream 65937 2376136 ~ 2382023 (-) True AMCG00007067
AMCG00007070 mRNA upstream 151955 2462154 ~ 2475341 (-) True AMCG00007070
AMCG00007071 mRNA upstream 286879 2597078 ~ 2629005 (-) True AMCG00007071
TU26061 other downstream 131813 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 156568 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1349321 952236 ~ 953062 (-) True G20630
TU25699 other downstream 1454094 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2731460 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2732321 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2746588 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3506610 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3697441 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile