RNA id: AMCG00007065


Basic Information

Item Value
RNA id AMCG00007065
length 6909
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00007065
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2326612 ~ 2346701 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTAGGGAGGTGCATCCTGGGAAATAAACCAACATGGGGATCAGATCCAAGTAGCACCATGCAGTTACCCACATCATGACTGACCGAGGGACAGGAACAATAATGACCATCATACAATAATCTGATATTAAGAGTCACTGTGTggatcccccccccccgaccCCGTGCTACCGTTCAGCGAGTCGGCGGCTCCCGATCTATACTCCGAGACAATGTGATGGTTTCTGGCCGGCCCTGTGCTCGTATGTGTGCGTGCTTTAGGAAGCTCTACTGGGAAAGTGCATCACTCCCAATCTTTGCCGGATGATGGACAGGAACTACCCGACTTCCAGCTTCGCAGACCCGCTGGCTCAATCACAACAGTCCGCGGTGTGGGCCTACGAGCGCAACACCGCCAGCATCAAGCCTAGtTTGAGCTATGGAGCCACACATCCTGACACAGAGCTTCTCCACAGACAGACGTATGCTGCTTCCCATCAGCTGCCCACATATGCAGCCACACATCACCCTACAGGGCTGTCTGGAATATTTGATACTGGTTTGCACACTGCTGGCAGTAACACTACTGAAACATCAGTCATGAACTTCCTCACTGCTATTGAGTCGCGTAACCCCCAGGCTGGCCCTGCGACAGCCTCCCTTCTCCCCCAGTTCAGGACTCCATCGTGGCAGACAGGCATGCACTCTTCAGCTGCTACGGAGTTGTTTGTGACTGGAGCGTTACCAGCTTCGGGAACTTTCCCCCCAGCGTCGGCGCTCTCTGCCTATCAGCACCCCAATACTTTCACCACCAGGAACTTTGCCACTACCCCCTCTTTGACGCTGCAGGACACGACTTTCAGCCCTTCCTCCAATGGCCTGCTGTCTCCTCACGACCCTCTACTGCAGATCAAGTCCTCGCAGAGCACCGTTCCCACCGCTTTGGCATTCGATCGCATCGGAAGCACTGTCTTGAGTACCAGCATACCGCCTCAGTCTTCAACATATCGTTCAGCCCAGGAATCGGCCCCTCATCTTTTGCAACCTCAGTTCAGCTTGCTGCCCTCGTCACTAGGCAGTGCACAGCAGGCCTCCCAGCCTTACAGCACATCAGTCTTTACAGGTTCGACTGCCTCCATAGAAAGAGCACTTCAGCGGGAATGTAGTGTTATCAAGCACCATCAGCGGCCTTCCAGCACACAGTCAGTTCAGGCACAGTTGTCCAGTGCTCAGCATTCCTTACAGGGTTATCTAACCAGTGGGAGTGATGTCACTTTCCAGGATCCCTCAAGGCAATCAGCGATGCCCTGCAGCCCAATTGGAGACACTACTCAGGTGAGCAATGGAGGATCGCAGCAGAAGACATCTCAAGCCACACTGGAGCAATCTCAGGCGTATCCATCCTCTATCCCATCCCCAGGGTTCTCGTCTGCATCTAGCACAAAAGCGAAAGACTGTTCAACAAAGCACACTCAACGGTCCTCGAAGGCAACTAAATCCCAAAGCGTATCTCCTGATGAGCAGACGCAGAGCTACCCCTCTCCTGGGCAGAAGCAGAGTACAGTGATAGCCAGCCAGTCACAGGCATACGCTTCAGCACAGCTGCCTAACTTAATGTCAGAAAGCCAATCGCAAAGCTACGTGACTTCACAAACCATGCCCGGCAGTGTCAGCCATTCACAGGTTTATTCTTCCAGTCAGTCAGAGAAGTTGCCTTCTTTGTATAAAACTCTAACTTCTTTCTCTGGCCAGTCAGAAAACTTGACCTCTGTAAGTCAAACGCTTAGTTACTCTTCcagtcagcagcagcagcaggtgttGTCTTCAGTTGGACACAATGAACAATATGCGGTTCAAACACAGGGTTTATGTTCAGTAAATCCTTCTCAAAGCTATTCTTCCAGCCACTCTCAGGGTTTGCCTACTGTGAGCTATTCTGCACAGTCCCAGGGTCTTTCATCGGTTAGTCCCTCACAGAGTTATGCTTCAGGACAATCGCTTACTCTGACCTCACAATCgctttcattttcttccactCGTGCCCAGAATTTGCCAGCTTCAAGCCCTACCCAGAACTATATGTTATTGCATTCTTCACCCAGCAGTCAGGTGAAAAATGGATCCTCGCCACAGTCTCAGAAGTATCTTCCTCCAGTCCAGTCACCTACTTTTTCTCCATCCTCCCATTCCCAGGCCTTGCAGAACAACAGACCCTCAACTGAATTAAAGCCATCCTATGGTAAAAGAAAATCAGACTCAAACCTATTTGTTCCTTCTAAGCAGGAGGAAGATGAGTTCCCTATTCAGGATCTGCAAGCATTACAGCAGGCTTCCCTTGAGGCGTCGGCCCAAACTCTTGCAGAAAGTGACATCGGAGAACATAGTGTCGTGTATGTGGTCTCCAAGACAGATGACCGGTATAATTCACAAAGCGTGATCAGGAGCAATTCACGGCCCGAAGATCAGATTGTTAGCCTTGCCCTTCAGGGATCTAAAAAGGAAGACCGAATGAGTTCTCTGAGCCACCATGGACAACATGTTACTAGTGCCAACAGCAGAGTGAACCAAGACCTGAAGAAAAACTCTAATATGACACAGCCATCACATGTTACCATGAGTTCAGAAGAGTTGAAGCAGCACTCTCTCTTGCATAAGGTACAGGAGTCTCGGTCACAGGATCATCAAACACAGGTTATCAGTGctcagcagcaacagcagggTCAAAATCATGCTTCGAGACAAACCCAGCACATACGTCTACCTAGTGCTCAGGTACTGCTGGAGCCCTCACGAGATTTGCAGATGATTTTAATCCAACAGTCTTTACTTCACTCAGGCCTTGATCCTTCCAAGATCTCCACGATGCAACAGCTCCCGACACAGTACCTTCAAATGGACGATCAGATCATAAATGCCAATGGTGGTCAGAATCACCAACAGCAGATTCTTCCTCCAAATTCGGAAGTCATGAAGATGGATGTGGTGGGATCTTCCAAATCGCTACAGCAGCATTTGTCGCCTAAAGATAATTTCAGCCAACCAAATCAGCATGAATCTAAGCATCACTTTGCTCTCAGTTCAATCTGTTTTCCTGATTCAATGTTGCTGGCAGATGAGAGGAACATTTTGTCTAATGTGGATGATATTTTAGCTGCCACAGCTGCAGCTTGTGGGGTTACTCCTCAAGATTCCTCAGAAGGTGACATGCCTGCGCTTGGAAGCCCTTCTGATTCAAAGGGACATTTTCAGGTGGTTGAGACCAGACACATTTCCCCCAATTACACCTCCCAGCACTCGATTGTTGCTAACCCACAGAATATGAGCATGACTCTAAATGGTGGTCAGCTAAACATGGGGATCCATTTAGTGTCGGCGGTGCAGCCCAAGACAGTCCTCGATCACCAAGGGCTTTCGGATTCAAACATGCAGTCAGCATTGACATCTCCGTCACTTAACTCTAGGCATGAAGTTGGAGATAAGAATGTGAGTTCTCTACAAAAGCCACGAAGCACTAGCCAAGAGTCGGAGGAGGACAACGAAGAGATACCAGATGACAGGACTCTGAACCATACTAATGATGCTGACTTCATCCCCAGTGGCAGGAGTATAAGCGATGAAAGTGTGGTTTCAGAAAACGAATTTAATTTAACTGGTGAAGATTATGACCCCACTGGACTCCTGAATAAGACAAAGCTGCAAATGGAGCCAAAGGGTAAAGTATCAGTGCAGCCCAGAGGAAGAATGAACAGCAAGACGGACGAGGTGATCCTGGAGTTTTCTCCTGATGGTTTTccaaagaaaaaaggcaaggCTAAAGGGCCTGGGAAGCTGATGGCAGAGGATGAAAACGGCAACCAGAAACCAATGAAACGTGGCCAGGGCAAGCGCCAGAACTCCAGAGGGAGTGACACGAATTCACCATCCACCTCAGACAACTGTTATGACGGCTATCAGCATCAGGAGAGGATACGACAAAAAATCCGGGAGGTGGAGGAGAAACAGCCTGAGGTAAAAACGGGATTCATTGGATCGTTTTTGGACTTCCTCAAGTCGGGACCTAAACAGCAGTTTTCCTCTCCTCCGATAAGAATGCCCAATCGTACCAGAAAGCCACCCGTCGCCTCCATACGGCCCCCTTATCCTCTGCCGCTGCCAGTGAAGCCTCAGCCTCCCCCCACATCGCTGATCTCTCCAGAGGCCGATGTCATCAGTCCATCCAAGAGACTTGAAGATGAACTCAAAAAGAACCTGGAGACCTTGCCATCTTTTTCTTCTGATGAAGATGACTCTGTAGGAAAGAATCAGGACCTCCAGAAGAGCATTTCATCGGCGCTCTCTGCACTGGACGAGCCCTCCGAGAAGAAGACCAAGCCAGAGGTTGCAGAGAAGACTCTCCTAGGTGCTGTAATAAAGCAAGAACAATCTCCAAGCACGCCTTCCTCAGTATTAAAGACGCAGGAACCTCCAGCCACTGCAGCTGAATACCCAGCACTCGAGGAGCTTAAGGACATTCCTTCTGACCAGCTAGCTGTGAAACTGACATCTGTGGCGATAGAGGGCTTGACAGATGAAGATCAGTCAGACAGTGGCGGGGAGGGCATGTACAGAGAGCGGGATGAATTTGTTGTGAAGATCGAGGACATAGACTGCCTAAAGATAACACTAAAAGCAGGAAGGGAACCTCCTGCCATCTGGAAAGTACAGAAGGCGTTGCTGCAGAAATTTGTACCTGAACTGAGAGATGGGAACCGAGTATTTTCAGCAACTAACAGTtACCTTGGTTACTTTGGGGATGCAAAGACCAAGTATAGGAGAGTGTATGTGAAGTTTATAGACACTGTGAACAAGAGGGAATATGTCAGGGTCTGCAACAGGAAACCAAGATGCAAGCCAATGCATTCAATGAGgggATCTCAATCCAAGTCTATGCTCAGTAACAAATCGGTTTCTGCTCCCGCACCTGACCCCATGGCCCCTAAACCTGCGATCAGCAAAGCTTCCACCTCCAAACCCAAAGCAAAGCAGCCCAAGGTCAAGGCAGAACCTCCACCTAAAAAGCGGAAAAAATGGAAAGAGGAGTTTTCCTCATCTCCCTCGGAGTCATCCCCAGAGGCCGTGAGCGAAGACGACGGTAAGTCCAGCATCCCCCTGCCCGAGTCCTGTCCGAGTGGGCCATTTCACAGGGGAAAATTTATTCCTCCCGTTCCCTTTGCCACTCGCTTCCTGAACACCAGGACGATGAAGGAGACGTTCAAGAGCTACGTGGAGCTCCTGATCAGCGTGGCCTTGGATGCAGATATGATGGAGGCACTGGAAAAGGAGAACGACGAACTGCTGCTTCCACACATGAAGAAGGTTGATGGGATGATCACCGATAACAGGAGGAGGCTCCTTCCGAAGCTCCGTGTTGGGCAGCTGTTCAAGAACGCATTGGACAGCTTTCCAGAACTGGCAGTTGTCGCAGACTTAAAGAAGGATGGGGAGACGCCTTCCTTTAAAGTCCGATTAAGTGGGAAATCCTACAATAAGAAGACGCTGAGACCTGCCAAAGCCTCTAGCAAACTGCCACTAGAATATACTGTGGACAAGGACAAAACCCAGTGGTTCTCATTGTACCATGCACTCCAACATTACAAATACCACACATACCTGATGTGCAAAGATGAGATTGCAGCGCTTCAGAAGCAGAGTGAGGATCTGGGACAGGAAGAGACTGTTCAGCTCTGTATGAAAAATGCCAAATGGGTGGAGAGTCTGTTTGACAAATTTGGTGAACTTCTGACACAAGTACAGCAAACCTGTTTGTAGCAATGAAACAAAGTGTGGTCgactaaacacatttttaaatctaccGTTTTTAAAGCACTAATTGATATACAGTAAAGACATCATAAAATGTTGGCATCCTGCAGTGCCAGGCGAGCTCTTACAACAAGTGGGCATTCTTTGCTTCAACAATGGATGTGCTGCACATGGTGCTGAAACAATAGAGTTGGACTTTACTCTGTTTAATATTctgaatcatgtttttaatgctggccaacattttttttttttttttctactttctaatttttttttgtcctttaaaGAGCCTTCCGTGACGGATCAAAGTGTCAAAGCATGCGCTAGATAGGAACAGGATTACTAGCATAGGaatcaaaacactttaaatcacaggaaatgaaatgctttaatatttttttttgcctgtcATCAgtcattaagaaataataaaaaaacaaatggtgggggtaattatatataaatacatttatatatatttatctatatatataaataaatatatatataaaacaatccaTTTCTGTAATGGAATGCCAAATTTATATAGACTATTGTAAATTTTGTAAAGAGAGCCAGTGTCATtaaattctttaaataaataaatttacataatatagAAATCTactttttttgctttaaagaCTCCTTTTATTATAACAATGGTTATAAGTCTGAACTTGGAGTTGGTGCAATCCTAATACTGCTTTTTGtgacatattttattgtaatgaaatgcaatgacCTTAACTATTTTCTctgtttgaataaaaaaaaatgaaattgcctttatacttttttttctttacaaatgtacattttatctcactaatagttgtatttttcacagaagaaaatattgtGGTTGAATTTGTTTCATGTATCTTTGTAATAcacttttcattgtttatggaaaaaaaactatacatttatatgttGATTACATattgtatactatatatatctTGAGGTAATCTCCTTTCTTTGTTAATACAAGTTTGCTTCAATGTTAACCAGAATATGCATACAGTATTTGACTAGTTTTGCTTTTCAAGTGTAGCTGTGTTACACACTGCAATTATTTTCtgatacatgaaaataaatttcCTACTAAACGAGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26117 lncRNA downstream 18494 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA downstream 37994 2286824 ~ 2288618 (-) True G20914
TU26116 lncRNA downstream 72052 2200053 ~ 2254560 (-) True G20908
TU26063 lncRNA downstream 154129 2171904 ~ 2172483 (-) True G20870
TU25945 lncRNA downstream 596133 1676304 ~ 1730479 (-) True G20795
TU26162 lncRNA upstream 80458 2427159 ~ 2427421 (-) True G20947
TU26186 lncRNA upstream 201303 2548004 ~ 2548289 (-) True G20965
TU26198 lncRNA upstream 282396 2629097 ~ 2637796 (-) True G20976
TU26204 lncRNA upstream 298204 2644905 ~ 2663649 (-) True AMCG00007072
TU26258 lncRNA upstream 555861 2902562 ~ 2903620 (-) True G21020
AMCG00007063 mRNA downstream 16413 2302383 ~ 2310199 (-) True AMCG00007063
AMCG00007062 mRNA downstream 28731 2290403 ~ 2297881 (-) True AMCG00007062
AMCG00007057 mRNA downstream 82180 2238167 ~ 2244432 (-) True AMCG00007057
AMCG00007058 mRNA downstream 108467 2205128 ~ 2218145 (-) True AMCG00007058
AMCG00007059 mRNA downstream 129757 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007066 mRNA upstream 3337 2350038 ~ 2363800 (-) True AMCG00007066
AMCG00007067 mRNA upstream 29435 2376136 ~ 2382023 (-) True AMCG00007067
AMCG00007070 mRNA upstream 115453 2462154 ~ 2475341 (-) True AMCG00007070
AMCG00007071 mRNA upstream 250377 2597078 ~ 2629005 (-) True AMCG00007071
AMCG00007072 mRNA upstream 298254 2644955 ~ 2663371 (-) False AMCG00007072
TU26061 other downstream 156042 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 180797 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1373550 952236 ~ 953062 (-) True G20630
TU25699 other downstream 1478323 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2694958 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2695819 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2710086 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3470108 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3660939 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025959 False 6780 mRNA 0.45 12 NC_007129.7 45676788 ~ 45698627 (+)