RNA id: AMCG00007129


Basic Information

Item Value
RNA id AMCG00007129
length 3142
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00007129
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 4948505 ~ 4958670 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCACACGAGTGTTGCCCGCAAACCCGCCCCTCTGGCTACACTGTATCTCTGCGCCGCCGCACTCCTGCCTGCCTGACGAGTGACGCACATCCGGCGTGACGTCACCGCGCCCGCTGGCTCGTCTCTCTCGGGTCCGCAGCCTCTTCCGGTTTGGTGCAGCGATGGCGCTGGGGCTGCCGTCACCGTCTCTGTCCTCCAGGACGCCGTCGCTGCTCTTGCTCTTGTCGGCGGTCTCTGTCGCGTCGCACCCCGCCGCCGGAGACAGGACGCTGAGGTTCGTCACTCTGGTGTATCGACATGGTGACCGCTCTCCAATCAAGGCCTACCCCaacgaccctcaccaggagaACGCCTGGCCGCAGGGCTTCGGTCAGCTCTCGCAGGAGGGGATGAGGCAGCATCTTGAGCTGGGACAGGCCTTACGAAGAAGATACAGAGGTTTTCTCGATGAAAGCTACAACCGGAGAGAAATTTCAGTCCACAGCACCGATGTTGACAGGACCCTAATGAGCGCCGAGGCCAATCTGGCTGGGCTGTACCCCCCTAATGGAAGTCAGCTCCTGTCGTTTCCACTGCTGGACTGTCCGCGCTATGATCTCCTGATGAACGAATCAAAGAAAACGGACATTTATGTGAACCTGATGAATACCAGCAAGGAGTTTCTGGACATGGTGAGGAACAACACGGGACTGAAGGACGCCTCTGTGGAAACGGTGTGGAGCGTCCACGACACGCTCTTCTGTGAGGTGAGCACAGCACCCTCCCCCGGCACTCATGTGAGCCGTGACACGCCAGGGCCAACTAAGCACAACATGACTCTGCCTGCGTGGGTGACGCCCGACGTCATGGAGCGCCTGAGGAAGCTCAAGGACTTCAGCTTTGAGTTCATGTTTGGGATTTacaagagggaggagaagagccGTCTGCAGGGAGGTATCCTTGTTGGCCATATAGTGAAAAATATCTCGGATGCTGCAAACCTGTCTGCTGTGGACCCTCTGAAGATGATGGTCTACTCGGCGcacGACACCACGATTGTAGCCCTCCAAGCGGCGCTGAATGTGTTCAGTGGCATACAGCCCCCATACGCCTCATGCCACATCTTTGAGTTTTACGTAGAGAGTAATGGgtccttCACAGTGGCGATGTTCTATCGAAATGAGACGGGGAAGGAGCCGTACCCCGTGACTCTGCCTGGCTGCACCCAGTTCTGCCCTCTGGAGGATTTTATCCGGATCACCAAGCCGGTCGTCCCAGAGGACCGGGAAAAGGAGTGCCAGATCTCGCGCACGCTGAAGGACACAGAGGTGGTCGTCGGGCTGGCGGTGTGTGGGTGCCTGCTGTCCCTGCTCATCGCGCTGCTGTTCACCGTGCTGTGCCGCCAGAGGGACCACGTGCAGGGGTACCGCCACGTCATCAACGAGGGGGACGAGCGCTCCTGACAATCACTCGCGCTACTGGGCAAACAGGACTCCTGGGACAGCGAGGAGGACCTCTGACGGAGACGCGCTCCCTGGGAACCGCTCTGTTGGGGGAGCGTCCCCAGGTCTTGACACGGGCATCCCCCACGCGGCCGCTGCCACAGACGGACAGGAGCCACGTTTGCTGTTTGTTGAGTGTGGCGGCGGGCGCGTGGGAGATCGCCGCCGGGCATCGTCACCCAAGAATCGCCTGTTCTGCTTCTTTAAAGATCTGTAGTGTGGCGTTGAGGTTGAGGTTATGATTTTGATCATATGACTTTGTTCCAATCTAGTTTTAATGCaatgaatgtttaaattaagggaccttttttattttaaggcatgtgaaaaaattgcttttttactGGAGGTTTttatcttgattttattttgatttcaacgGAATAGATTCACAGGCCAGTAATGAGATCACCTTCCCCTAAACTCCAAAGTAGGAACTATGTTTGAAGGGGAAGGTGGAGATTCCAGGAGAATTGCTCAATCACTGTTTACAGTTTCATAGTGGGTTATTGTTGACGATTGATGAATACTGTTTTCTCCCTGCAATTCTGGCACTTCTGCTCGCCTTATGTCAGGTTGTGGTAAAACCCCTAAGTGTCTGACATGAAGATATTCCAGTTTGTCGTAGAGAAGCGGCAAAAGCCCAGCGTTAAAATGTCAACGGCTGTGCGGCCAGAGCCAGGGAAAGACATTACACGCGTCtgcctttcttttaaaaaatgtatttctaaaaaaatTGAGGATTAGGTTCATTATTAGCTTTGGTATCACTGCTAGTACTGTACGGACCGTTCTTCTTTCAGTGAGAAAGTAAGGGGGCATTGGGACGACAAGATGGGGGGGGCGGATTAAAGCGGGACACGTCGCGGCCTGGACGTTTTTAACCTCTTCAGAAGTGCTTCTGCACGACACTCTCACACTGGAGACTGACACATCACTACAACGACTGCCCCCCCTGTGCAAACTTCACCAAATGTATAcgctcttttcttttttctaattgATGAATGACTGACTTAAATAAAGAGGCTCTAATGATGTGTTTGGGGTTCACTTCCTCGATACTGCCGGTCCTGCTCCGTCATTCCTACAAACGCACCAGAGCAGAGGCTGACAGTGTTTAACAGCAGAGCCGGCTCCATTCTGCTGTCCTCTGCCCTGCATCGTCCTTCATCATGTTACCTGATCGTCTGCAGGTGTCACTCAAATCCCCGTTCACCAGACGGACGGGACACAGAACGACGCTCATTaacttgttcttgttttctccggtgtgtttttgcacattttttgcCAACATGATTCGTGATAAAGATGCATTATGCTTGTGGTTTTGCAGAAGACACTGAATGCTACAGAATTATTAACGCTAAGGTCCCTATTTTTATACAGAATCCATCTAAAGTTCGTAGTATTTCCTGaagtttttttattcttgtccTTGGAAAATATGGTAAACTTGCAATGGGTAACATGATGCAAAATCTTTAGGGGGTGACACTGTCATTTTTTTACACTTGTGTAGAAGCAGTGCTTGCATTTTAGTCCAGGTTGGTATtgggtagagagagaaaaatcaagGCCTGTGTGAAACATGATTCCTTTTAAATCGCataacattgttttgtaaataaaatgcaagtttCTGTAAGATTAATA

Function

GO: NA

KEGG:

id description
K14410 ACP2; lysosomal acid phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26764 lncRNA downstream 2785 4942071 ~ 4945720 (-) True G21414
TU26762 lncRNA downstream 4654 4942071 ~ 4943851 (-) False G21414
TU26694 lncRNA downstream 237579 4681049 ~ 4710926 (-) True G21367
TU26693 lncRNA downstream 266043 4681049 ~ 4682462 (-) False G21367
TU26603 lncRNA downstream 575380 4357713 ~ 4373125 (-) True G21286
TU26770 lncRNA upstream 846 4959516 ~ 4959753 (-) True G21418
TU26771 lncRNA upstream 4687 4963357 ~ 4963560 (-) True G21419
TU26775 lncRNA upstream 68532 5027202 ~ 5027726 (-) True G21423
TU26825 lncRNA upstream 173658 5132328 ~ 5132542 (-) True G21462
TU26919 lncRNA upstream 536679 5495349 ~ 5495735 (-) True G21522
AMCG00007131 mRNA downstream 16883 4925129 ~ 4931622 (-) True AMCG00007131
AMCG00007133 mRNA downstream 27895 4918537 ~ 4920610 (-) True AMCG00007133
AMCG00007132 mRNA downstream 30012 4895642 ~ 4918493 (-) True AMCG00007132
AMCG00007130 mRNA downstream 55209 4884584 ~ 4893296 (-) True AMCG00007130
AMCG00007122 mRNA downstream 247191 4684255 ~ 4701314 (-) True AMCG00007122
AMCG00007137 mRNA upstream 154592 5113262 ~ 5121365 (-) True AMCG00007137
AMCG00007136 mRNA upstream 190533 5149203 ~ 5151982 (-) True AMCG00007136
AMCG00007138 mRNA upstream 208225 5166895 ~ 5209036 (-) True AMCG00007138
AMCG00007140 mRNA upstream 343381 5302051 ~ 5304131 (-) True AMCG00007140
AMCG00007139 mRNA upstream 349745 5308415 ~ 5319239 (-) True AMCG00007139
TU26061 other downstream 2777935 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 2802690 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 3995443 952236 ~ 953062 (-) True G20630
TU25699 other downstream 4100216 845929 ~ 848289 (-) False G20609
TU26783 other upstream 82989 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 83850 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 98117 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 858139 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 1048970 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile