RNA id: AMCG00007131


Basic Information

Item Value
RNA id AMCG00007131
length 999
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00007131
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 4925129 ~ 4931622 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTATCGACACGGTGACCGCTCTCCAATCAAGGCCTACCCCACTGACCCGTACCAGGAGAGCGCCTGGCCGCAGGGCTTCGGTCAGCTCTCAAAGAAAGGGATGAAGCAGCATTTTGACCTGGGGCAGATGCTTAAGAAACGCTATCATGACTTTCTCAATGAAAGCTACAACCGAAGAGAGATTTTAGTCTACAGCACAGATTATGACAGGACTCTGATGAGTGCACAGGCTAATCTAGCAGGCCTGTATCTGCCTTCGAAAGATCAAATCTTCCATCATGACATCAGGTGGCAGCCCATTCCTGTGCACATTGCACCCAAAAAGCTGCTGTTCTTCCCACTGGCAGGCTGCCCTTTGTTTGAGAACCTGAgaaatgaaactaaacaaaccgATGAATATTTGAGCGTGGCTAATGATAATGAAGATTTTCTTAACGAGCTGATGAACTACACTGGAGCAAATAACCTCTCTATTGACAACGTCTGGCAGATCCACGATACTCTCTTCTGTGAAAGGCAACACGGTAAGGAAACACCCGATTGGTTGACTGACGCCATGATGGACAAATTGTCAAAGCTGAGTCAGTTCAGCTACGAACTGCTGTTCAGAGTCTTTGATACAAAGATGAAGTCCCGTCTTCAGGGAGGCTTACTCCTTGGtcatatattgaaaaatatatcagaCACGGCTGACAATTCTTCTCTGAAGATGTTGGTTTACTCAGCGCACGACACCACGATTGTGGCCCTGCAGTCAGCACTGGACGTTTACCAAAGAAAACCTCCCCCGTACGCCACCTGCCACATTTTTGAGTTGTATGAGGACGATTACGGATTATTGACAGTGGAGATGTTCCATCAAAACAAGACCGGGGGGGAGCTGCTCCCACTGCGTTTGCCAGGCTGCACCCAGGCCTGTCCCCTGGAAGATTTTCTCCGGATCACCCAGCCAGTCATCCCAGTGGACTGGGAAAAGGAGTGCCAGATCCATTATTAG

Function

GO: NA

KEGG:

id description
K14410 ACP2; lysosomal acid phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26694 lncRNA downstream 214203 4681049 ~ 4710926 (-) True G21367
TU26693 lncRNA downstream 242667 4681049 ~ 4682462 (-) False G21367
TU26603 lncRNA downstream 552004 4357713 ~ 4373125 (-) True G21286
TU26560 lncRNA downstream 645560 4279316 ~ 4279569 (-) True G21249
TU26383 lncRNA downstream 1422284 3501883 ~ 3502845 (-) True G21122
TU26762 lncRNA upstream 10449 4942071 ~ 4943851 (-) False G21414
TU26764 lncRNA upstream 10449 4942071 ~ 4945720 (-) True G21414
TU26770 lncRNA upstream 27894 4959516 ~ 4959753 (-) True G21418
TU26771 lncRNA upstream 31735 4963357 ~ 4963560 (-) True G21419
TU26775 lncRNA upstream 95580 5027202 ~ 5027726 (-) True G21423
AMCG00007133 mRNA downstream 4519 4918537 ~ 4920610 (-) True AMCG00007133
AMCG00007132 mRNA downstream 6636 4895642 ~ 4918493 (-) True AMCG00007132
AMCG00007130 mRNA downstream 31833 4884584 ~ 4893296 (-) True AMCG00007130
AMCG00007122 mRNA downstream 223815 4684255 ~ 4701314 (-) True AMCG00007122
AMCG00007123 mRNA downstream 253298 4661836 ~ 4671831 (-) True AMCG00007123
AMCG00007129 mRNA upstream 16883 4948505 ~ 4958670 (-) True AMCG00007129
AMCG00007137 mRNA upstream 181640 5113262 ~ 5121365 (-) True AMCG00007137
AMCG00007136 mRNA upstream 217581 5149203 ~ 5151982 (-) True AMCG00007136
AMCG00007138 mRNA upstream 235273 5166895 ~ 5209036 (-) True AMCG00007138
AMCG00007140 mRNA upstream 370429 5302051 ~ 5304131 (-) True AMCG00007140
TU26061 other downstream 2754559 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 2779314 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 3972067 952236 ~ 953062 (-) True G20630
TU25699 other downstream 4076840 845929 ~ 848289 (-) False G20609
TU26783 other upstream 110037 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 110898 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 125165 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 885187 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 1076018 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile