RNA id: AMCG00007137


Basic Information

Item Value
RNA id AMCG00007137
length 1508
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00007137
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5113262 ~ 5121365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGATCTCAAGACCGGAGCAGGGCTGGCCTGTGTTTGGCCCAGGGTCCCTCTCGGGCCCAGCATGGAGTCAGTCTTTGCCAAGGGAAACGGCCGGGCAGCCAAGTCTCCTGCGAGAGGTGGAGGATGTTGGAGCTCCTCATTGGTGGAGCGTGACTGAGAGTGGACCACAGACCTGGTTTCACCTGGAACTGACAGGTGAGAGTCACCCAGCACTGCAGAGAAACTCCCAAGGAGCGCAAGGAGAACTGGACTTCTGTAGCTGTTTCGTTGGGGAGGATATTTAGAATGCGTGGTCTTTTCGCGATGATTGTTATCCTGCTGGTGGTGCTGATGATGGCGACCACAGAAGCAGGGAAAGAGAAGAAAGGGATGCGAGAGGGCACCTGCAAAGACCAGACCAAGAAGCTCAAATGCAAAGTCCCCTGCAACTGGAAGAAGGAGTTCGGAGCTGACTGCAAGTACAAGTTCGGGAGCTGGGGGGAGTGCGACACCGTGACTGGGGTGAAGAACCGCTCTGGGACCCTGAAGAAAGCGCTGTACAACGCCGACTGCCAGCAGACCATCAGTGTGTCCAAGCCCTGTCCCCCAAAGAGTGTCTCAAAGCCCAAAGGAAAGAAGGGACGAGGGAAGGAGAACTAAGGACGCCTGGATGACTTTGATGGAACAATTTCATCTCCCTCTGCTTCGGGCAATAGCACAATCCTCACCTCCCTGCTAGCCAAACTTCTgagacaactgtgtcactgcagCTTCATGGTCTGCCTccttttataaaacataaataaatgagaatttTGTAAGTCTTTttatgaaacatttgtttttaatgtacagtaCTTTTTTCAACAAATATCTTTTTTTGTAGGCTGATTTATTAAGGTGAAATGGGTGGGTTGGTGGATGCCTGCATCTGCTTATAACTGTggttaatgataataatgaaacaaaataaatctacagAAATAGAGTTGGTGTGGCAGTTTGGATATTACGCAACACCTCAGTGGACAAACGTAAATCGAGTTTAGGAAAATTTCAGTGACatatgaagtgtttttttcactACCAGTTAGTATTACTAACACATTTCAACAGGGTTTATTCACTGGATAAAGAAGATGGTTTGATACATCATGAATTACTAAGATTAGAAAAccccacatttattttgtgcctGTTTATTTTAGATGGCTGGGGATAGTTGGGTATTTGTGATATAAACtatggaagaaaaataagaaaactagGGCTTTTAAATCCACAGGAATATCCAAATCTGAAAactcaaaattaaatgtaattagggGAATAGATACTTTAAGGTGAAACCTTGAGAAGATTTAGAATAATCTGTTGTAcgtgtgtatttatacatatggAATTTAGACACAGCctttgtatatacatacacacattcacatagTATATTTTTCTGATTCAGGTATGCTGTCCacgcaagttttttttttttttgacagttttcaataaaataaactttcttGAAACA

Function

GO: NA

KEGG:

id description
K06828 MDK; midkine

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26775 lncRNA downstream 85536 5027202 ~ 5027726 (-) True G21423
TU26771 lncRNA downstream 149702 4963357 ~ 4963560 (-) True G21419
TU26770 lncRNA downstream 153509 4959516 ~ 4959753 (-) True G21418
TU26764 lncRNA downstream 167542 4942071 ~ 4945720 (-) True G21414
TU26762 lncRNA downstream 169411 4942071 ~ 4943851 (-) False G21414
TU26825 lncRNA upstream 10963 5132328 ~ 5132542 (-) True G21462
TU26919 lncRNA upstream 373984 5495349 ~ 5495735 (-) True G21522
TU26941 lncRNA upstream 393621 5514986 ~ 5515971 (-) True G21535
TU26943 lncRNA upstream 395862 5517227 ~ 5518751 (-) True G21537
TU26942 lncRNA upstream 400250 5521615 ~ 5523677 (-) True G21536
AMCG00007129 mRNA downstream 154592 4948505 ~ 4958670 (-) True AMCG00007129
AMCG00007131 mRNA downstream 181640 4925129 ~ 4931622 (-) True AMCG00007131
AMCG00007133 mRNA downstream 192652 4918537 ~ 4920610 (-) True AMCG00007133
AMCG00007132 mRNA downstream 194769 4895642 ~ 4918493 (-) True AMCG00007132
AMCG00007130 mRNA downstream 219966 4884584 ~ 4893296 (-) True AMCG00007130
AMCG00007136 mRNA upstream 27838 5149203 ~ 5151982 (-) True AMCG00007136
AMCG00007138 mRNA upstream 45530 5166895 ~ 5209036 (-) True AMCG00007138
AMCG00007140 mRNA upstream 180686 5302051 ~ 5304131 (-) True AMCG00007140
AMCG00007139 mRNA upstream 187050 5308415 ~ 5319239 (-) True AMCG00007139
AMCG00007145 mRNA upstream 316897 5438262 ~ 5447370 (-) True AMCG00007145
TU26789 other downstream 55856 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 63742 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 64423 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 2942692 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 2967447 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 695444 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 886275 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 2378082 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 3271831 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 5065949 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile