RNA id: AMCG00007139


Basic Information

Item Value
RNA id AMCG00007139
length 901
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00007139
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5308415 ~ 5319239 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCTCATTCCTCAGCACTTCTCTGAGAACATGGAGGACTTTTCCAACGAGCTGTTCAGCAGCTTCTTCGACGAGCACCTGCTGGCCGAGAAGAATCCCCTGCTGGACATGGAGCtggacccccccaccccggacATCCAGGCCGAGCACAGCTACTCCCTGAGCGGGGACTCAGCCCCCCAGAGCCCCTCCACTCCCATCAAGATGGATGAGGGAGGACAAGACTCGGATGGGGGCATGTGGTCCTTCGGCCATGACCTGACTGCCATCCTGGTGAAGCAAGAACCAAACCTCCTGGCTGATCCAGCGCCCTCCCCCCTCATGAGCCCCCAGCCCTTGAACCTGGCACCTCCTCCCAGAGAGAGCCCCCCAGAGGAGAcgGCTCCGAAAGACCCGAACGCCCTGCCTGCCATAAAAGCCGAGCCGAAAGAAGTCAACCAGTTCCTCACCGTCCCGTCAGAAGAGCAATTGCAGTTGCCCCCAACCCCTCCGAGCAGCCACGGCAGCGACAGTGATGGCTCCCAGAGTCCGCGCTCGCTGCCCCCCTCCAGCCCGGCGCGCCTGCAGCCCCGCACCTCTGCCGCCATCTCGTCCTCGCCGCTCCTCACCGCGCCGCATAAGCTGCAGGGCACCTCCGGACCCCTGATGCTGACAGAGGAGGAGAAGCGAACCCTGATTGCGGAGGGCTACCCCGTGCCCAACAAGCTGCCCCTCACCAAGGCAGAGGAGAAGGCGTTGAAGAGAGTCAGGAGGAAGATCAAGAACAAGATTTCTGCTCAGGAGAGCCGgcggaagaagaaggaataTGTGGAGTGTCTGGAGAAGAAGGTGGAAACGTACACCTCCGAAAACAACGAACTGTGGAAGAAAGTGGAGACCCTGGAGAGTGCGAACAGGTGA

Function

GO: NA

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26825 lncRNA downstream 175873 5132328 ~ 5132542 (-) True G21462
TU26775 lncRNA downstream 280689 5027202 ~ 5027726 (-) True G21423
TU26771 lncRNA downstream 344855 4963357 ~ 4963560 (-) True G21419
TU26770 lncRNA downstream 348662 4959516 ~ 4959753 (-) True G21418
TU26764 lncRNA downstream 362695 4942071 ~ 4945720 (-) True G21414
TU26919 lncRNA upstream 176110 5495349 ~ 5495735 (-) True G21522
TU26941 lncRNA upstream 195747 5514986 ~ 5515971 (-) True G21535
TU26943 lncRNA upstream 197988 5517227 ~ 5518751 (-) True G21537
TU26942 lncRNA upstream 202376 5521615 ~ 5523677 (-) True G21536
TU26960 lncRNA upstream 240355 5559594 ~ 5562208 (-) True G21550
AMCG00007140 mRNA downstream 4284 5302051 ~ 5304131 (-) True AMCG00007140
AMCG00007138 mRNA downstream 99379 5166895 ~ 5209036 (-) True AMCG00007138
AMCG00007136 mRNA downstream 156433 5149203 ~ 5151982 (-) True AMCG00007136
AMCG00007137 mRNA downstream 187050 5113262 ~ 5121365 (-) True AMCG00007137
AMCG00007129 mRNA downstream 349745 4948505 ~ 4958670 (-) True AMCG00007129
AMCG00007145 mRNA upstream 119023 5438262 ~ 5447370 (-) True AMCG00007145
AMCG00007149 mRNA upstream 151865 5471104 ~ 5485827 (-) True AMCG00007149
AMCG00007153 mRNA upstream 169956 5489195 ~ 5493804 (-) True AMCG00007153
AMCG00007151 mRNA upstream 177709 5496948 ~ 5501797 (-) True AMCG00007151
AMCG00007152 mRNA upstream 207743 5526982 ~ 5552311 (-) True AMCG00007152
TU26789 other downstream 251009 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 258895 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 259576 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3137845 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3162600 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 497570 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 688401 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 2180208 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 3073957 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4868075 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile