RNA id: AMCG00007140


Basic Information

Item Value
RNA id AMCG00007140
length 639
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00007140
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5302051 ~ 5304131 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGGGCAGTGATCGATGGGGTTGATGGGGACACCGCACCGGGGCAAACAGTCCTCACACACCTGTCTctcctccagcagctgcagAAGCTCCAGGCGTTGGTGACGGGGAAAGTGCCCCGATCCTGTAAGATGGCTTCCACGCAAACTGGGACTTGCCTGATGGTCGTGGTTGTGTGTTTCGTGCTGGTCCTGGGCTCCTTCATGCCCTGCCTGCCCGAACTCTCCTCGGTGTCTCAGACCGTGAAGTCCTCGCCGCTGTCCTCGGCAGATGTCTACACCACCGGTCAAAAGCCGTCACACACAGAGAGCCGAGGCCGGAGCGCGGACGCTGCATTTCTGCTGACACAGTCGCACACGCAGAGTCCGGCCCGGCCCGTCATTCGCTCCCGCAGCCTGCTGTTCTACGACGAGGGCTCGTCTCTGGAGGACCGCTACAGCGCCCTGCTGAAGATGGACAACGCCGGGGACTGGGAGGGGACGCCCCCCGACTTCCCCGAGGAGACGGCCGGCCGTGAGCTGCGGGGGGAACACGAGACCACCAAGTACCTGAGCAAAGCCCACGTGGACGCCATGGATCTGAACAGCACGGGCGCCGAGTTCGTCCACGAGAAGGAGCAGTTTCATGAGCGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26825 lncRNA downstream 169509 5132328 ~ 5132542 (-) True G21462
TU26775 lncRNA downstream 274325 5027202 ~ 5027726 (-) True G21423
TU26771 lncRNA downstream 338491 4963357 ~ 4963560 (-) True G21419
TU26770 lncRNA downstream 342298 4959516 ~ 4959753 (-) True G21418
TU26764 lncRNA downstream 356331 4942071 ~ 4945720 (-) True G21414
TU26919 lncRNA upstream 191218 5495349 ~ 5495735 (-) True G21522
TU26941 lncRNA upstream 210855 5514986 ~ 5515971 (-) True G21535
TU26943 lncRNA upstream 213096 5517227 ~ 5518751 (-) True G21537
TU26942 lncRNA upstream 217484 5521615 ~ 5523677 (-) True G21536
TU26960 lncRNA upstream 255463 5559594 ~ 5562208 (-) True G21550
AMCG00007138 mRNA downstream 93015 5166895 ~ 5209036 (-) True AMCG00007138
AMCG00007136 mRNA downstream 150069 5149203 ~ 5151982 (-) True AMCG00007136
AMCG00007137 mRNA downstream 180686 5113262 ~ 5121365 (-) True AMCG00007137
AMCG00007129 mRNA downstream 343381 4948505 ~ 4958670 (-) True AMCG00007129
AMCG00007131 mRNA downstream 370429 4925129 ~ 4931622 (-) True AMCG00007131
AMCG00007139 mRNA upstream 4284 5308415 ~ 5319239 (-) True AMCG00007139
AMCG00007145 mRNA upstream 134131 5438262 ~ 5447370 (-) True AMCG00007145
AMCG00007149 mRNA upstream 166973 5471104 ~ 5485827 (-) True AMCG00007149
AMCG00007153 mRNA upstream 185064 5489195 ~ 5493804 (-) True AMCG00007153
AMCG00007151 mRNA upstream 192817 5496948 ~ 5501797 (-) True AMCG00007151
TU26789 other downstream 244645 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 252531 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 253212 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3131481 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3156236 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 512678 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 703509 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 2195316 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 3089065 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4883183 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile