RNA id: AMCG00007151


Basic Information

Item Value
RNA id AMCG00007151
length 1845
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00007151
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5496948 ~ 5501797 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggctgatcggtgtatatattagATAGATGCACAATATGTGGTAATAtctaacaataaaacacattattttgttacagaCCCCAAACACCTGTACATATCTGTGAAAACATTTAAGTTGTATGTCCGCTTAATGCCCAGGCTGACCCTAGAAGAGGACAAGATGAATGTATGTCCATCGGAGTTGAGTTGCAGCTCTACTCATGTAACCTGTTCAGTTGTAGATGATGCAGGCTGTGGAGAGGAGGCTGTGGGGAAAAGCACGGCTCACAGCTGCCTGCAGCCCATCAGCGATTCGGACCCTGGACCCCAGTCCCCCTGCAGGCTCCTGCACAGCCTGCCCCTTGGCCTGGCGGTGGGACCATCCCTGGTGCAAGACAGGCACATGGGGATCTGGTGTGTGGGTCAGGCCTTGCAAAAGGGAACCATCTTCAGACCCCTGGAGAAGCAGGCCAGGAGCAACGACGACCAAGTGAGCAAAGAGGGAGTTGGGCAGAAGGCCGAGGGGGCTGTGGCCAGCGTGCCTCTAGAGGAGGCGGGTCACTGGATGAGGTTCACCTGTGAAGCCAGAAATGCAGAGGAGCAGAACGTGCGTGTGGTCCGGGCCCGGGGGGGGGAGCTGTGCCTCAATGTGCTCAAGGACATCAGGCCGGGAATGGAGCTCCTCCTTCACCGGGAAGAGCAGCGAGAGGAGGCAGCCGAGGGAGACGACAGACAGCGCGGCATGCAGGCGGTGGCCGTGCCAGGGCAGGACATGTGCCGTGAAGAGGGCCCAGCTGCTCTAGAAGGAAATGGCAAAGAGGGTTTTTCAGAAGCACAAGAATCGAATGCAGGTCCCCCAGAGACCCTTGCAGCCCCCGACCCATTCAAGCAGGAGTCTCGGGTGGCAGCAGCAGACATAAAACGGCCCCAGCGACTTCAGCGCAAAAGAAGGAAATCTCAAATCCCTACAGACAGCAGGAGAGACCTGAGCGATGGGGTGCGTGGCGGTGCCAGAGAAACAGACTACCGGGAGGACGTTGACAACAACTCtccacaaacaaacagcaacgcAAAGGGTTCGTCTGATGGACCTTCGATAGGGACAGGGGACGAGAGTCAGGATTCCCACGTGAAGAGCAGAGAGGAGTGTGGCCGCAAGGAAGACGATGGCAAAGGGGAGCTTGGGGCCGGCAGCTCCAGAGTCAGCCTACGCCTGGCTGCCAAACCTCGGAAAGTGCACGCCCTTGTCAGCAGGATTCAGAAGCGTCTGCACGAGCGCAAGATGAGGGTGCTGGAGCAGCAGGGGAGGGAGAAGACCCCGTCCGGGCGGGAGAGGGAGGACGCCCCGGTGAGCGATGCCAGGAATGAGCCAGAAAAACCAGAGCAGGGCCGAGCAGCGGCGCTGGAGTCCGATCACTCGGCCCCTCTGAAGGGCAGGCCCAAGAAGGGCACCAAGAGGCCCAACAGGGGGCCAGACGCTGACCATAAGGACAGCGCCGCCCCACCCGAGGAGCAGTCCGTAGTGTACGTGCACGCCATCGAGGCTGTGGCGATGGGGACCGGCGCTGACGAGAGACAGGTGGTGATCAGTGCCGCTGCCCCGTTCCAGAACAGCGTGGCGTTCGGAGCCGAGCACGTCCTCCACGGGGCGGTGGGCTCCTCGGACGAGCTGGCCCGGACCGCGCACGGCCAGCCCGGGGGCCACATCCAGCTGAACGAGGAGATCATCGAGATCATCATCCAAGACACGCACGACTCCAAGTGCATCATCGTGGCGGAGGAGAAGTCGCACGGCAGCGTGGTGATCCTTCAGGAGGACGAGGGGCTGAGCTCGGTGGCAGAGACTGTGGAGATCGAGACGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26919 lncRNA downstream 1213 5495349 ~ 5495735 (-) True G21522
TU26825 lncRNA downstream 364406 5132328 ~ 5132542 (-) True G21462
TU26775 lncRNA downstream 469222 5027202 ~ 5027726 (-) True G21423
TU26771 lncRNA downstream 533388 4963357 ~ 4963560 (-) True G21419
TU26770 lncRNA downstream 537195 4959516 ~ 4959753 (-) True G21418
TU26941 lncRNA upstream 13189 5514986 ~ 5515971 (-) True G21535
TU26943 lncRNA upstream 15430 5517227 ~ 5518751 (-) True G21537
TU26942 lncRNA upstream 19818 5521615 ~ 5523677 (-) True G21536
TU26960 lncRNA upstream 57797 5559594 ~ 5562208 (-) True G21550
TU27012 lncRNA upstream 219466 5721263 ~ 5721542 (-) True G21582
AMCG00007153 mRNA downstream 3144 5489195 ~ 5493804 (-) True AMCG00007153
AMCG00007149 mRNA downstream 11121 5471104 ~ 5485827 (-) True AMCG00007149
AMCG00007145 mRNA downstream 49578 5438262 ~ 5447370 (-) True AMCG00007145
AMCG00007139 mRNA downstream 177709 5308415 ~ 5319239 (-) True AMCG00007139
AMCG00007140 mRNA downstream 192817 5302051 ~ 5304131 (-) True AMCG00007140
AMCG00007152 mRNA upstream 25185 5526982 ~ 5552311 (-) True AMCG00007152
AMCG00007150 mRNA upstream 78987 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007156 mRNA upstream 91077 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007158 mRNA upstream 111951 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007157 mRNA upstream 172380 5674177 ~ 5677569 (-) True AMCG00007157
TU26789 other downstream 439542 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 447428 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 448109 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3326378 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3351133 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 315012 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 505843 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1997650 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2891399 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4685517 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile