RNA id: AMCG00007152


Basic Information

Item Value
RNA id AMCG00007152
length 1386
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00007152
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5526982 ~ 5552311 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAGCGCCGGGGTGTGCGGGGAGATTGGACGGGTTTTCGCGTTTGCTGCTCGAATGATTTTCTCTGCCCCTGTCATTGCTCTGGGTGCCACTCTGGGCACGGCGTCGGGCATCCTTGCCATCTGTGGACTGTCATTCCTCTGCAAGACTTACAGGAAAGGACTGTCTGATGAGGATGAAGAATCGGATCCCGAAAAGACCAAACCCAGCGTGTTTCATTCCGCCCAGCAGTTCAGCATTAAAAAATCCACAGAGCCCATCCAGCCCAGGACTCTCCTGAAGTTTCCCAAAATTTACAAGCCCAAGCCGGCGGTCACCTGCCCAGAAGTGATTAATTACACCGATTACACCTTGGAGACGACCAACGAGCCTCCATCTGAGACAGCTGGCGAGCCAGACGATAGTAGCCTAGCAACGGAGGGATGTGAAGAGGTCTTTATCATCCCCAGGCAAGCGGAGCACGTGAGCGTGGAAGCGGGCAGCGACGGCTACATCGTGGGCCTGATGACCACGGCGTCGGGCAGGAAGGAGGCCCAGACCACCATGCGTCGCCTGACGCCCCATGTGCTGTGGGAGGAGCCGCTGGTGTTCCCACTGCCCGAGGGCTACGAGGTGGAGGGGGAGATCGCCCTGTCGCTGTACAGCTGCGACCGCTTCTCCCGGCACGCCAACCTGGGCGACGTGAGCGTGTCGGTGGGCGAGCTCCTCCTCTCTATCAGCTACCTGCCGGCTGCCAACCGCCTGGGGGTGGTGGTGATGAAGGCGCGGGGGCTGCAGTCAGACAAGCTTAAAGACGTGATCGACATCTCGGTGAAGCTGGCCCTGAAGCACCAGGCCACCAAGCTCAAGAAGAAGCAGACGCGCAGGGTGAAGCACAAGATGAACCCGGTGTGGAACGAGATGATGATGTTGGAGGTGCCCCACGAGCTGCTGTCCAAGtccagcctggagctggaggtGCTCAACCAGGCGGGGACGGGCGCCGGCGGCCTGCAGTCTCTGGGCCGCTGCTCCCTGGGGCTGCAGACCAGCGGCACGGGGCTCCAGCACTGGCAGCAGATGCTGAACAACCCCAGGAAACAGATCGCCATGTGGCACCCCCTGTACGGGAAGTGGGGTGGGAGAAGATTAACCCTAAGGAAGGCGTTCCTCCAGCATCACCCGTCGGGTCCTGACACGGAACAACCCCAGGAGACCAAACAGTACCTGGGCAAGATGGGCTGCTTCCGAGACGCTCTGCTGTCTGACTCACGTCCCACGGGAGGCCAGGAGCGTTTCCTGGGAAACGACGAAGAACACGGCTCATGTTTGCGCTCACCAAGGACGGCACATGCAGccgcggaggaggaggaggagccggtCTGTGAAGGCAGCCGTCTCTGA

Function

GO: NA

KEGG:

id description
K19913 SYT13; synaptotagmin-13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26942 lncRNA downstream 3305 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 8231 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 11011 5514986 ~ 5515971 (-) True G21535
TU26919 lncRNA downstream 31247 5495349 ~ 5495735 (-) True G21522
TU26825 lncRNA downstream 394440 5132328 ~ 5132542 (-) True G21462
TU26960 lncRNA upstream 7283 5559594 ~ 5562208 (-) True G21550
TU27012 lncRNA upstream 168952 5721263 ~ 5721542 (-) True G21582
TU27114 lncRNA upstream 362761 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 788468 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 966812 6519123 ~ 6519736 (-) True G21739
AMCG00007151 mRNA downstream 25185 5496948 ~ 5501797 (-) True AMCG00007151
AMCG00007153 mRNA downstream 33178 5489195 ~ 5493804 (-) True AMCG00007153
AMCG00007149 mRNA downstream 41155 5471104 ~ 5485827 (-) True AMCG00007149
AMCG00007145 mRNA downstream 79612 5438262 ~ 5447370 (-) True AMCG00007145
AMCG00007139 mRNA downstream 207743 5308415 ~ 5319239 (-) True AMCG00007139
AMCG00007150 mRNA upstream 28473 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007156 mRNA upstream 40563 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007158 mRNA upstream 61437 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007157 mRNA upstream 121866 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007162 mRNA upstream 139831 5692142 ~ 5693305 (-) True AMCG00007162
TU26789 other downstream 469576 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 477462 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 478143 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3356412 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3381167 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 264498 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 455329 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1947136 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2840885 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4635003 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile