RNA id: AMCG00007153


Basic Information

Item Value
RNA id AMCG00007153
length 390
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00007153
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5489195 ~ 5493804 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCCAGGGAATCTGGAACGGGAATGTCTGGAGGAGATCTGTGACCACGAGGAAGCCCGGGAGGTCTTTGAGGACGTGGGGAAGACCGAAGACTTTTGGAAGAGATACTTGGcCTGTTACGGAAAACGAACCAAGACGAATATACAGCCACTGAGGACTTGTTTGGAcgGGTTCGGTCCTGACGACACCACCAGAGGGGATGCTTGTGAAGGGGACAGTGGAGGTCCGTTTGTCATGAAGAATCCAGAGGATAACCGTTGGTATCAGATTGGGATCGTGTCGTGGGGAGAAGGCTGCGACCGAATCGGAAAATACGGGTTCTACACACACTTGTTTCGCATGAGAAAGTGGATGTTGAAAGTCATCGAGGGTTCGGGTACTGATTGA

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26825 lncRNA downstream 356653 5132328 ~ 5132542 (-) True G21462
TU26775 lncRNA downstream 461469 5027202 ~ 5027726 (-) True G21423
TU26771 lncRNA downstream 525635 4963357 ~ 4963560 (-) True G21419
TU26770 lncRNA downstream 529442 4959516 ~ 4959753 (-) True G21418
TU26764 lncRNA downstream 543475 4942071 ~ 4945720 (-) True G21414
TU26919 lncRNA upstream 1545 5495349 ~ 5495735 (-) True G21522
TU26941 lncRNA upstream 21182 5514986 ~ 5515971 (-) True G21535
TU26943 lncRNA upstream 23423 5517227 ~ 5518751 (-) True G21537
TU26942 lncRNA upstream 27811 5521615 ~ 5523677 (-) True G21536
TU26960 lncRNA upstream 65790 5559594 ~ 5562208 (-) True G21550
AMCG00007149 mRNA downstream 3368 5471104 ~ 5485827 (-) True AMCG00007149
AMCG00007145 mRNA downstream 41825 5438262 ~ 5447370 (-) True AMCG00007145
AMCG00007139 mRNA downstream 169956 5308415 ~ 5319239 (-) True AMCG00007139
AMCG00007140 mRNA downstream 185064 5302051 ~ 5304131 (-) True AMCG00007140
AMCG00007138 mRNA downstream 280159 5166895 ~ 5209036 (-) True AMCG00007138
AMCG00007151 mRNA upstream 3144 5496948 ~ 5501797 (-) True AMCG00007151
AMCG00007152 mRNA upstream 33178 5526982 ~ 5552311 (-) True AMCG00007152
AMCG00007150 mRNA upstream 86980 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007156 mRNA upstream 99070 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007158 mRNA upstream 119944 5613748 ~ 5628372 (-) True AMCG00007158
TU26789 other downstream 431789 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 439675 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 440356 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3318625 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3343380 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 323005 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 513836 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 2005643 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2899392 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4693510 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile