RNA id: AMCG00007156


Basic Information

Item Value
RNA id AMCG00007156
length 2661
RNA type mRNA
GC content 0.54
exon number 8
gene id AMCG00007156
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5592874 ~ 5605868 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGCCGCTCTCCGACTGCCATGCCAGACCTTGCGTTCGCTCTCATGTCCGGCTCCCTCGGCTCCTCTGGTCTCTGCCCCGCTCTGGAGGAAGAGGTCTCTCCGTGTCTCGGCCACCAGCAATTGAACCCCGTGGCCTCTTGGGTCTGCCAGCTGGCATTGCCTTTGATTGTTGAGACCCTCAACGCTCACGAATCCCCCTTGGCTTTCTCAACTTGCTCTGCTTTTCTCCGATGCCCCTGATACTCAATTTTTCAGGGCTGAGGATTAAAGAGtgagagtttttttattttttatttcctcttctcctcttctcctctcctggGTTCCTGGTGAATTTTCCTGAAGCCACATCCAGTCTGAGCCCCTCATCTGTTGTCTTTTCTCCACCCTATGTTGTGGAGTGGATGAGCATTTTTATGAGGCAGTTTGCAGCAGAAATGGGCCAGGACCAAACCAAACAGCAGATCGAGAAGGGCCTGCACCTGTACCAGACCAATCAGACGGACAAAGCCCTGCACGTGTGGCTGAAGGTTCTGGAGAAGACCTCTGACCCGGGAGGGAAGTTCAGGGTGCTGGGTTGTCTCATCACTGCCCATTCGGAGATGGGAAAGTACAAGGAGATGCTCAAGATCGACACTGCCAGAGAGATGGAGGACCCGGATTACCTGACGGAGGGCTACCTCAACCTGGCGCGGAGCAACGAGAAGCTCTGCGACTTCCAGAAGGCCATCTCCTACTGCAAGACCTGCCTCAACATGCAGGGCACCACCATCAGCCTGCAGCTTAATGGCCAGGTGTGCCTCAGCATGGGCAATGCCTTCCTGGGGCTGGGTGTCTTCCAGAATGCCCTGGAGAACTACGAGAAGGCCCTCCGCTACGCGCACAACAACGACGACAAGATGCTCGAGTGCCGGGTCTGCTGCAGCCTCGGCAGCTTCTACATCCAGCTCAAGGACTACGAGAAGGCCCTGTTCTTCCCGTGTAAAGCGGCCGAACTGGTCAACGACTACGGCAAGGGCTGGAGCCTGAAGTACCGTGCCATGAGCCAGTACCACATGTCCGTGGCCTACAGGAAGATGGGCCGCTTGCCGGACGCTATGGAGTGTTGTGAGGAGTCGATGAAGATCGCCCTGCAGCACGGAGACCGGCCCCTGCAGGCCCTGTGTCTGCTGAACTTCGCTGACATTCACCGGAACCGGAGCGACGTGGAGAAAGCATTCCCTCGATACGAGTCCTCGATGTGTATAATGACGGAGATCGGCAATCGCCTCGGACAGGCACACATCTACCTGGGGGTGGCCAAGAGCTGGCTTATACAGAAGGAGCTGGACAAGGCTCTCGAAGCTCTGCAAAGGGCACAGGAGCTGTCTGAGGCCGTGGGGAACAAGGTGCACTGCCTGAGCGAGGCTGTGTACCGCAGCCGGGAGCAGCAGGATGACCTGAGGGAGCAGGTGGTGAAGTTCCTGGAGTGCGTGGAAGAGATGGAGCTGTACTGCGGCATGTGCGGCGAGTCAATCGGCGAGAGGAACCAGCAGCTGCAGGCCCTGCCCTGCTCCCACGTCTTCCACTTGAAGTGTCTGCAATCCAATGGGACGAAGGGCTGTCCGAAGTGCCGTCGGGCGTCCGTGAAGCCAGGCTTCGTGTGAGCTTGCCCCATCCACCCCTGGATCGGGACTCGCCCACGACCCGCAGGATGCCACATGGGATGCCCACTTCCTGTCTGGCCTGAGGGGGTGGTGCTGCTCCCCCGGACTCGCTCTGGGACTTGGAGCGCAGCCGTCTACTTTCAAACGGGCATCAGAGAGACTCTCAGACAAGAAAGGACTGCGCTGCCAAACTAGCTCAGCAGCCTGAGGTCCAGAGTCTGTTTTTTGATGCGTCAAGAAGGGACATTTCTCTGAAAACTAATGACGGTGTGGAATGTAACCCCCAGGTCCCCGTTTGCCAAGTTACAGACATGCAGGTGACCATAGTCTCATCAAACACTGCCTTATTGTACCATGTACCTCCACgtccagtgtttttgtttttctatcacTGACTGAAGAGCTGTTGGTTATTTGTTGACAATGTGTGATGCGGGGGACCCCACTGAACACTGTGTTTGTACTCGTGTGAAAAGCATGTGTTCAGTGCCACAGCCCCCTGGCAGTGATCTACCCACCACGCGTGTTTAGGTCACCTGTGTGAAACACCTCATGTGGGTTTAGGAAATGCTCATTTACCAGCAACAGTTCTGTTAGAACATTTCTGTTAGAAAAAACATCATacgtgcagagagagagagaaagaatccAAATCTGCAGGTTATAtgatagttaggtccataaatatgtggacagtgacacaattgtcatcattttggctctgtacgacaccacaatggatttgaaaggaaacaatcaagatgtcctatattatctgctcagattcagccagaTGCTTCTCAACTGCAGAtggacccaaagcatactgcgacAGCAACCCAAGAcctttttaaggtgaagaagtggaattttctgcaatggccaagtcagtcacctgacctgaatccaattgagcagcatttcacttgctgaaggcaaaactgaaggcaaaacccccaagaacaagcaggactaaaggcagctgcagtccaggcctggcagagcatcactgg

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0005856 cytoskeleton cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0033130 acetylcholine receptor binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24924 RAPSN; receptor-associated protein of the synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26960 lncRNA downstream 30666 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 69197 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 74123 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 76903 5514986 ~ 5515971 (-) True G21535
TU26919 lncRNA downstream 97139 5495349 ~ 5495735 (-) True G21522
TU27012 lncRNA upstream 115395 5721263 ~ 5721542 (-) True G21582
TU27114 lncRNA upstream 309204 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 734911 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 913255 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 960349 6566217 ~ 6569739 (-) False G21756
AMCG00007150 mRNA downstream 4645 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007152 mRNA downstream 40563 5526982 ~ 5552311 (-) True AMCG00007152
AMCG00007151 mRNA downstream 91077 5496948 ~ 5501797 (-) True AMCG00007151
AMCG00007153 mRNA downstream 99070 5489195 ~ 5493804 (-) True AMCG00007153
AMCG00007149 mRNA downstream 107047 5471104 ~ 5485827 (-) True AMCG00007149
AMCG00007158 mRNA upstream 7880 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007157 mRNA upstream 68309 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007162 mRNA upstream 86274 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007163 mRNA upstream 128806 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007167 mRNA upstream 220757 5826625 ~ 5841867 (-) True AMCG00007167
TU26789 other downstream 535468 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 543354 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 544035 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3422304 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3447059 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 210941 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 401772 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1893579 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2787328 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4581446 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile