RNA id: AMCG00007157


Basic Information

Item Value
RNA id AMCG00007157
length 1575
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00007157
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5674177 ~ 5677569 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTCCAGCGAGGATGCGGGGGTGCTGAACGTGGGGGGCTCGTCTGGCGAGGAGAACTACTTCCTGGGCTACACCTTCACCGACCGCTCGCACTCCAGCCGCGTGGTCAAGAGCATCATGGACCTGTGCCTGGAGGACGGGCTGTTCGCCGATGTCACGGTGATGGTGGACGGCAAGGAGTTCCAGCTCCACCGACTGGTCCTGTCGGCCCAGAGCTGCTTCTTCCGGTCTATGTTCACCTCCAACCTGAAGGAGGCACACAACCGCAGCATCGAGCTGAAGGACGTCAGCGCCCGCGTCTTCCAACTGCTCGTGGACTACATCTACCACGGCACCATCAAGCTCAGGGTGGAGGACCTGCAGGACACCTACGAGATGGCCGACATGTACCAGCTGACCGCCCTGTTCGAGGAGTGCTCCCGGTTCCTGTCGCGCACCGTGGCCGTCAGGAACTGCCTGCAGGTGATGTGGCTGGCTGACCAGCACAGCGACCAGGAGCTGTACACCTCGGCCAAGCACTGCGCCAAGATCCACCTGGTCCAGCTGCACCAGACTGAGGAGTTTCTCAACCTGCCCCTGCGGCTGCTCGTGGACATCATCAAAGACGGAGTCCCCAGCTCCCAGAACCCGACGGCGGCCATCGACTCGTGGGTGAACCACAAAAAGGACGAGCGGGGGGCGCACTCGGGGATGCTGCAGGACAGCCTGAAGGAGATCGGCGAGAATGTGCACATCTACCTGATCGGCAAGGAGGAGACGCGCACGCACTCCCTGGCCGTGTCCCTGCACTGCGACGAGGACGACGCCATCAGCGTGAGCGGCCAGAACAGCCTGTGCCACCAGATCACGGCGGCCTGCAAGCACGGCGGCGACCTGTACGTGGTGGGCGGTTCGATCCCGCGGCGCATGTGGAAGTGCAACATGCACACCATGGACTGGGAGCGCTGCGCCCCGCTGCCCCGCGACCGGCTGCAGCACACGCTGGTCTCCGTGCCGGGTGAGGACGCCATCTACTCGCTGGGCGGCAAGACGCTGCAGGACACGCTGTCCAACGCCGTCATCTACTACACCGTCCGGGACAACATGTGGACCGAGACCAGCCAGCTGGACACGGCTGTCTCCGGGGCGGCGGGCGTCAACCTGGGCGGCACCATCTATCTGCTGGGCGGCGAGGAGAACGACATGGACTTCTTCACGAAGCCCTCGCGCATCATCCAGTGCTTCGACACGGCCGCGCAGAAGTGCCACACCAAAGCCTACATGCTGCCGTTCGCCGGGTGCATGCACGCCACGGCGCACAAGGACCTCATCTTCGTCGTGGCCGAGGGCGACTCGCTGGTCTGCTACAACCCGCTGCTGGACAGCTTCACGCGACTGCGCTTCCCCGAGGCCTGGAGCTGCGTGCCCTCGCTGTGGAAGGTGGCCAGCTGCAACGGCTGCATCTACGTCTTCAGGGACAAGTGCAAGAAGGGCGACGCCAACACGCTGAAGTTCGACCCGGCCACCTCGGTGGTATCCGTCATCAAGGGCATCAAGATCCTGCTGACGAACTGGCAGTTTGTTCTGGCCTGA

Function

GO: NA

KEGG:

id description
K10472 KBTBD4; kelch repeat and BTB domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26960 lncRNA downstream 111969 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 150500 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 155426 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 158206 5514986 ~ 5515971 (-) True G21535
TU26919 lncRNA downstream 178442 5495349 ~ 5495735 (-) True G21522
TU27012 lncRNA upstream 43694 5721263 ~ 5721542 (-) True G21582
TU27114 lncRNA upstream 237503 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 663210 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 841554 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 888648 6566217 ~ 6569739 (-) False G21756
AMCG00007158 mRNA downstream 45805 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007156 mRNA downstream 68309 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007150 mRNA downstream 85948 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007152 mRNA downstream 121866 5526982 ~ 5552311 (-) True AMCG00007152
AMCG00007151 mRNA downstream 172380 5496948 ~ 5501797 (-) True AMCG00007151
AMCG00007162 mRNA upstream 14573 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007163 mRNA upstream 57105 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007167 mRNA upstream 149056 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007168 mRNA upstream 181282 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007170 mRNA upstream 195207 5872776 ~ 5896585 (-) True AMCG00007170
TU26789 other downstream 616771 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 624657 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 625338 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3503607 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3528362 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 139240 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 330071 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1821878 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2715627 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4509745 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile