RNA id: AMCG00007158


Basic Information

Item Value
RNA id AMCG00007158
length 2383
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00007158
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5613748 ~ 5628372 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctcctccttgcaGTGCGAAGAAGATGAATGGGACCCTGGACCACCCTGACCAGCCCGACATCGACGCAATCAAGATGTTCGTCGGCCAGATCCCTCGGAGCTGGACCGAGAAGGAGCTGCGGGAGCTGTTTGAGCCCTACGGTGCCGTGTACGAAATCAACGTCCTCCGGGACAGGAGTCAAAACCCGCCGCAGAGCAAAGgttgttgttttgtaacatACTACACACGGAAAGCAGCATTAGAAGCACAAAATGCCCTCCACAACATGAAAATCCTGCCCGGGATGCATCACCCGATTCAGATGAAACCTGCAGACAGCGAGAAGAATAATgCCGTGGAAGACAGGAAGTTGTTCATAGGGATGATCTCGAAGAAGTGCAACGAGAACGACATCAGGCTCATGTTCTCGCCATACGGACAGATCGAGGAGTGCCGGATATTACGGGGACCGGATGGCTTGAGTCGAGGGTGTGCTTTCGTTACCTACACAGCCAGGCAGATGGCGCAGTCGGCCATCAAGGCAATGCACCAGTCGCAGACTATGGAGGGCTGCTCCTCCCCCATCGTGGTGAAGTTTGCTGACACCCAGAAGGACAAGGAGCAGAAGCGCATCGcccagcagctccagcagcagaTGCAGCAGATCAACGCAGCCTCCATGTGGGGGAACCTCACCGGGCTCAACTCCCTGGGCCCGCAGTACCTGGCACTTTATTTGCAGCTCCTCCAACAATCTGCTTCGTCTGGGAACCTAAACGCACTCGGCAACCTTCATCCGATGACAGGATTAAATGCAATGCAGAATTTGGCTGCTCTGGCGGCTGCAGCCAGCGCCACACAGAGTACCCCCACTGGCACAAACGCACTTACCACTTCCAGCAGCCCTCTCAGTGTGCTCACCAGCTCAGGTACGGGACAGCAGGCACAATCTTCCTGGGAAGCATACAAGGCTGGGTCCTCCCCCTCTTCTAGCACCAACTCTTCTGTCAACCAAATGGCTTCTCTGGGAGCGCTGCAGTCCCTGGCAGCCGGGGCCGGTGCCGGGCTCAACGTGAGCTCTTTAGCAGGAATGGCGGCTCTGAACGGAGGCCTGGGCAGCGGGGGTCTGTCGAACGGCACTGGTAGCACCATGGAGGCGCTGACCCAGGCGTACTCTGGGATCCAGCAGTACGCCGCTGCCGCGCTGCCCAGCCTGTACAACCAGTCCCTGCTCACGCAGCAGAGCGTCGGCGCGGCCGGGAGCCAGAAAGAAGGCAAGTCTCTGCTCCAGGAACACGGTCCCGAAGGAGCAAATCTGTTCATTTACCATCTACCCCAGGAGTTTGGAGATCAAGATCTGCTCCAAATGTTCATGCCGTTCGGAAATGTCATCTCTGCCAAGGTGTTCATTGACAAGCAGACCAACCTCAGCAAATGTTTTGGTTTCGTAAGTTATGACAATCCAGTCTCATCTCAGGCAGCCATTCAGTCCATGAACGGTTTCCAGATTGGCATGAAGCGACTGAAGGTTCAGCTAAAAAGATCCAAAAATGACAGCAAGCCATACTGAGTGTTTTTCTCTCAAATGGACTTGGTTAGAAAATGTTTTCGaTATCTTCGTGCCCGTTTGTTCATCGTTTGCCTAGCATGTCGATGTGACGTCAAAAGTTCATCGTCCAATCCTTGTCTTCTGAGCTTCTCTGATGCTTGAAATTTCACCTTTGACCTTGTGTTAACTTTTGACGcttattaattatacaattttttttttttttccttcatttctgtCGTTTTGTGTGCTGCCAACCAGATGTGGTAGAAAGACTGCTAGgtagtgaaaaaatatatatatttgaagttacatttgaatattgttACAAGCAAAAAGAGAATCTATTTTTCTAGAACTTCCTAACATAACCACTAGATTTTGCAGAcgcagtttttttctttttgtttgttttttggggttttctttatttttttagcttattttttttatttgtttggttgttgttttcttttgttcagttttgGATTTTCCCCCCTCCCTTGTTTCCCCTCTTTTCTGTTTTCGGGGCAGTCTTCCTATCACATCATGTATTTGTCTATAAGCAGCCAATCAATTTGTAGAAGctacttttgtgtgtgtatgcgtgcgagtgagtgtgtgtgtttttgtttctctcgtTAGTTCTGAACTTTTTTTAGGATGTCTGTGGTCACATTTTGCTGAACCTGAGGATGGCTTTGTAATTTTTGTGCTAGGTTAGTTGGCATGATGTATTTTTTGGGAGTTTCTATTAACCGAGTGACAACATTAATGTAGACACTTgaattgccttttttctttagTGTCTCTTGCCATCTTAGGcacatatacttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K13207 CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26960 lncRNA downstream 51540 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 90071 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 94997 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 97777 5514986 ~ 5515971 (-) True G21535
TU26919 lncRNA downstream 118013 5495349 ~ 5495735 (-) True G21522
TU27012 lncRNA upstream 92891 5721263 ~ 5721542 (-) True G21582
TU27114 lncRNA upstream 286700 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 712407 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 890751 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 937845 6566217 ~ 6569739 (-) False G21756
AMCG00007156 mRNA downstream 7880 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007150 mRNA downstream 25519 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007152 mRNA downstream 61437 5526982 ~ 5552311 (-) True AMCG00007152
AMCG00007151 mRNA downstream 111951 5496948 ~ 5501797 (-) True AMCG00007151
AMCG00007153 mRNA downstream 119944 5489195 ~ 5493804 (-) True AMCG00007153
AMCG00007157 mRNA upstream 45805 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007162 mRNA upstream 63770 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007163 mRNA upstream 106302 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007167 mRNA upstream 198253 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007168 mRNA upstream 230479 5858851 ~ 5859267 (-) True AMCG00007168
TU26789 other downstream 556342 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 564228 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 564909 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3443178 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3467933 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 188437 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 379268 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1871075 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2764824 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4558942 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067930 False 3709 mRNA 0.43 15 NC_007118.7 38535934 ~ 38570935 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_10658906_10667378.mRNA True 2165 mRNA 0.45 12 CI01000026 10658574 ~ 10667753 (-)