RNA id: AMCG00007163


Basic Information

Item Value
RNA id AMCG00007163
length 1124
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00007163
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5734674 ~ 5752971 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTATGCAACTCTGGATACTTCTCCTTTTGCACAAACCTGAGGAATGggttctgtctgtgtgtctataaAAGTCAGACAGAGGCAGGAGTCAAGCCCAGGAACCCGGAGCCATGAGGTCTGCGATTGTCGTCTCCTTTGCCTATGCACTGCTCACTCTTGTGCACTGCCACCCTGTCAAGTTTTCCTTGAATCTGAAGATAGACAATGATGACCGCCAAGATCGATCTTCACGTCACACAGGCAACAGTACAGATGATGAAGCTTTTGATGTCTCGACGTTGATTGAGAAAGCCAATGAGAACCTGGCACAAGACCCCGATGGTCCACTCGTTCTGTTCGGGGACATTGCCATGGATCTGGGCTTCGGCAACGCCGACCCCTGTACCTCTCGGAATTGCAAATGGAAGAAGGGTTCAGATGGGAGAGTACATGTCCCCTATGTCATCTCCTCGGCATACTCTGCGAGAGAGCACAGTATCATCGAGTCGGCCCTGCAATCATTCTTTTACTCCACCTGCATCCAGTTCGAGAGGCGCAATCAGCACGAGGACTACCTATCCATCGAATCCCGCTCCGGGTGCTATTCCTTCGTAGGCCGGCGGGGGGGGCGACAGGTTGTGTCCCTACAGCGAGGCGGATGCGTTTTTCATCATACGCGCAGCGACCGCGACCAACACGTCCGAATCTTATACGAGAACATCATCCGCGGCCAGGAACACAATTTTAACAAGATTAATACCAACAACCTTGGGACTCCGTATGACTACGGCTCTGTAATGCACTATTCGAGGTTTGCCTTCTCCGGCAATGGACGGCCAACAATCGAGCCGATCCCAGACCCCAACGTGTCAATTGGAAGAGCCCGGGAAATGAGCCCGATCGACATTGCGAGGATCAATCGGCTCTATGAATGCAGGAAACTGGAAGCTCTCACGGTGTGTTGTCCTGGATGCACTCATCCCCGTGAGGGAGAAGACCTGGCTAAGAGAGCCATGAGAACGGCAGCAGGGAAAGCGAAAGAGCCCTTTGAagtgtccagtccagtccagtccgaAGTCCTTCCTGCCCCATTCCTCTCTCACGACTGCAGACATGAGGAGGCGAGAACTGGAAATGGATAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27012 lncRNA downstream 13132 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 172466 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 210997 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 215923 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 218703 5514986 ~ 5515971 (-) True G21535
TU27114 lncRNA upstream 162101 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 587808 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 766152 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 813246 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 813246 6566217 ~ 6569739 (-) True G21756
AMCG00007162 mRNA downstream 41369 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007157 mRNA downstream 57105 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007158 mRNA downstream 106302 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007156 mRNA downstream 128806 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007150 mRNA downstream 146445 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007167 mRNA upstream 73654 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007168 mRNA upstream 105880 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007170 mRNA upstream 119805 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007173 mRNA upstream 254758 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007172 mRNA upstream 328564 6081535 ~ 6088041 (-) True AMCG00007172
TU26789 other downstream 677268 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 685154 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 685835 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3564104 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3588859 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 63838 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 254669 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1746476 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2640225 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4434343 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile