RNA id: AMCG00007168


Basic Information

Item Value
RNA id AMCG00007168
length 417
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00007168
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5858851 ~ 5859267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCCATGAAGATCCTAACGAGCACTGGGCTGTTTCTGGCATTTTGCGCGTTAGGATTGCTAGCGATGGCCATCTGCACGGATAACTGGTACGAGACGGACGCGAGGAGGCACCGGGAAAGGTGCAAGAATTACGCCAACAAGAGGACTGATCCCGGGTACATTTATATCTCCAATCACAACCTCCCCCTCCGCATGCCTCCCAAGGATACTAGTAGCAGGAGAGGGAAGGGAGCGGGCAGCGGGGCTCTGCCCAGAGCCAGGCGGCATTTCCTGGCAGCTGCCTCGGCGATGGAGTCCCACTGCAGCCGCCAGTTCAACTCCACCATCTCCGGGTTGTGGAGGAAGTGTCACCGGGAGGGCTTTGACCTGGAGACCGAAGATCTCATCTATAAAGGTTGGGACCGCATATAG

Function

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27012 lncRNA downstream 137309 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 296643 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 335174 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 340100 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 342880 5514986 ~ 5515971 (-) True G21535
TU27114 lncRNA upstream 55805 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 481512 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 659856 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 706950 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 706950 6566217 ~ 6569739 (-) True G21756
AMCG00007167 mRNA downstream 16984 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007163 mRNA downstream 105880 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007162 mRNA downstream 165546 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007157 mRNA downstream 181282 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007158 mRNA downstream 230479 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007170 mRNA upstream 13509 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007173 mRNA upstream 148462 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007172 mRNA upstream 222268 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007176 mRNA upstream 262435 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007177 mRNA upstream 497743 6357010 ~ 6372398 (-) True AMCG00007177
TU27087 other downstream 38567 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 801445 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 809331 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 810012 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3688281 2167310 ~ 2170570 (-) False AMCG00007059
TU27173 other upstream 148373 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1640180 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2533929 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4328047 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 7492250 13351517 ~ 13352073 (-) True G22838

Expression Profile