RNA id: AMCG00007170


Basic Information

Item Value
RNA id AMCG00007170
length 3574
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00007170
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5872776 ~ 5896585 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCGCGGATGTTTGGTTCCGGCGAGGAGACGTGGCTGCGGGAGGAGCTCCGTGCGCTACAGTGCAGCCCTGACGCCGAGAGCCGCAGCGGCTGCGACAGAGCTGCGCGCCTCCCTCAGCGAGCTGGATGGCAGGGACTGTCTGGAGAGAGAGCTCGAGCAATCGCTACAGGTCCCGAGCCCCGTGCTGGTGTGAATCAAGCCTGGATCAGAATGAGAACTCTGAGACCCTCCTTCAATCTACTTGTGTGCCTCTGCGTCGCTGCCCTGCTGTTCGTGTCATCGGGCGCCTCGAGCCACAGAGCCAACACTAAGAAGATGTCTCAGGCGACGGCCGTGCAGGCAGCGGGCGGCTCGTGGGGCTGGAGCACCGAGGACCTGCTGGGCTTCGGGGGGTTCGCCGAGCTCTTCGTGGGAGAGCGGGCGGACGCCTGGTTCTGCTCCCTCATCGGCTCCCTCATGGTGGGGCTCAGCGGGGTCTTCCCTCTCCTGGTCATCCCCATCGAGGCCGGAGCAGCGCTGAAGACCGACGCGGGCTGCCAGAAGCTGAAGCGGCTGCTGAGTTTCGCCATCGGGGGCTTGCTGGGCGATGTGTTCCTGCACCTCCTCCCCGAAGCCTGGGCTTACTCCTGCAGCAGCGCCGGCACAGATGGGAAATCCAGCCGTCACCGTCATCAGCTGCTGGGCCTGTGGGTCATCACCGGCCTGCTGTCCTTCCTCATCGTGGAGAAGATGTTCCCAGACAGAGAGAGCCAGGACGATGCCAAGAGGGAGAGCCAGTGTCCACCGGGCTGCCCGGACGCTGAGCTTAGTTTGCACAGAGGGGCCTGCTGTGGGCTGATAAGCTGTCCGCAAGACAAATCCTCCTCACCGGTGGCCAACGGTCACTGCTGTCATTCGAGTCACTCCACACTAAAGCCAAAGATAACACGGCACCAACCGGACAACAAAATAAAGACTAGCGGGTACCtgaacctggtggccaactgcATCGATAACTTCACCCACGGCCTGGCGGTGGCAGGCAGCTTTCTCGTCAGCAGAAAAGTTGGCTTCCTGACGACCCTCGCCATTCTTCTTCACGAGATACCACACGAGGTGGGAGATTTTGCCATTCTCCTGAGGGCCGGGTTCGACCGCTGGAGCGCCGCGAAGATGCAGCTGTATACCGCCCTGGGGGGGGTCTTGGGCGCCTGCTTTGCACTGTGCGCACAGTCTCCCAAAGGAGCAGAAAATGCTGCATCGTGGATCTTGCCGTTCACGTCGGGTGGCTTCCTCTACATTGCTCTGGTCAACGTTGTGCCCGATCTGCTCCAAGAGACCAATCCCAGAAATTCCCTCCAGCAGATCGGTCTCCTGCTCAGTGGAATAGCAGTGATTCTCCTGATGTCCACAATAGTAGACTGAACCCTAAAGAAACTTCACCGTGTGAAGATTAACCATGAGGGACAAAGACACTCTTCTTCTTTTTAGCTTTAATAACTCCTGGagaacagtatttttttctgtccctGGAAGTGCAACACATTTCTCCCACCCCACCTATCATTTCTCAAGTCTGTTCGGTCTTGTGAAATCCCACCCGGAAGTTATCTGACAATCAACACTGAAGATCTTTCCCTGACTTCCCCAGCATCCTTTGCTCCGCACCGTGAGGCTCACAGGAGGCAGGTGACCTTGAAGTTATCGTActgactggagagagagaaagtaaaaaTGAGGGAAAAAGAGCAGCCTGCCAACTTTACACAAATCCACGTGAATCTGTAGAGCAGCTCCATCCCTCAGAGTCCCAAATCTGAACACGGCATCTCTCCCTACAGGCCAGGTACGAAGTTCGCCAGCCAAAGAAGTGCACTCCTGCTCCACATGAACACAGCCAGCCGGGTTCACACGCCAGATGGGAAAGCAAACCGGCCTGAAATACCGGAGGATTGAAGCTCGGGGCGGAGAGATGTTAGCCTTGCGTTCACGTGGAGACAGGCGTCGAGATCTCAGGATGTTTATGAGGACGATCCTTGGCCTTTGAAAACGGGGAGTGTGAACTGAACTTGAGTAgccacttttattttcattgttttgtgttttgggaGGAAAATAAGTCAAACCTTGTGCTCCGTGTTGGCTGGTCCATTTGCAGTGACCCTACTGTGTGGAGTATCTTCACTGTcatcatttttgtttgcttgaaaGGGCTGTGCAAGAATATTTTGGACACTTCTCTCGTTGTGTAAAGGGAGGGGGTTGTGACGGAGGGAAGGGCATTCGGTTCGACTCATTCCTCCCCACAAAGCACTTTCACATGTTTACCTCAGTCTGTTGGTGCTGTTCATTttcgtttttagtttttccgGGTGAGGAGGCGACATTCACACTCCCTCCTTCCCCGTCACTCAGCAGACGCCTTCATCCAAAGTGACTTGCACGGTTCCTCAAACGCTGACGTGCCGTGTTCTTCAGATGCAACGTCACACCGAAGACAACATCGATGGACGGGGACAGGGGTAGCTGATGTGTTCCTTCCACGGataaattgtaatgtaatgtaattttggtGACGATTGAGTTGAATCCACgactgcatattttattttatattatttagttGTAAACTGTGGTAACAAAGGGGAGAGAGATTCTTGTGGCACCCTGAGTTGAATGGCTTCAAAGAGCCCTGCTGTATGAAAACGAACACTTTGGAAACTGAATTTCGGCCTCTTCTAGTCTCGTCCTCCAGGTATAGGCCTGTTAGGGTCATCTCCACTTTATGCTTAGGTGTCCTCCGTTTCCCAGGGGCTGTTCGTTTTGATACGGCAGGGCCCGTCTGATGTAAcccactgcatttacattttgatgaCCAGGGTGAAAAGAGCAGAGCAAAGACGATGACTGAAACAAAGCACATGAACAGATAAATCTGTTtgtcatctttgtttttttgttgtttttaagctgCTTAGCGGAGCATGGTTTGCTTCACAAGCCCAGATTCCATTTGGATTTAGCCAGAGATTTGCAAGCCGCCCagtcaaattattaaataaaaaaaaacaaaccaaccaaacaaacatcACCAAACTCCTCTAAAATTTCCTTTtctaataattattacaatccacataaaaataaacttatcAGGTCCGTGTAGCTTCCCTCGATCGTACTGACTGATTTAcgtgtgtacatatataatgtgtgtacatatattaaattaaatgtatttatagtcaGGTTTTCTTTAAATTGAGTGAGTGAACATCTGATTTGTAAATCtctaattttatatatatatatatatatatattatattatgaatCTTTAAGTGCACATACCTATCCACATTGTCTCTGTAGAGTCGCAGCTtatatttttaagctttttatCCGTGCAATAACTGACAGACAGAACGGCAATAGTTACATTTGAACACGCCTTATACCCTCTGGTCAGGTCCTCCCTTAGTTTTAGATTTACAGTCCGAATATGGTTTTAGAAAGAGACTCACCACTCCTGCTTATTGGGATTctttttgtttgcagttactaacttattaaactgttttgcaaaCTCTAAA

Function

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14719 SLC39A13, ZIP13; solute carrier family 39 (zinc transporter), member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27012 lncRNA downstream 151234 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 310568 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 349099 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 354025 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 356805 5514986 ~ 5515971 (-) True G21535
TU27114 lncRNA upstream 18487 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 444194 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 622538 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 669632 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 669632 6566217 ~ 6569739 (-) True G21756
AMCG00007168 mRNA downstream 13509 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007167 mRNA downstream 30909 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007163 mRNA downstream 119805 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007162 mRNA downstream 179471 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007157 mRNA downstream 195207 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007173 mRNA upstream 111144 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007172 mRNA upstream 184950 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007176 mRNA upstream 225117 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007177 mRNA upstream 460425 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007185 mRNA upstream 758828 6655413 ~ 6660262 (-) True AMCG00007185
TU27087 other downstream 52492 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 815370 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 823256 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 823937 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3702206 2167310 ~ 2170570 (-) False AMCG00007059
TU27173 other upstream 111055 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1602862 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2496611 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4290729 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 7454932 13351517 ~ 13352073 (-) True G22838

Expression Profile