RNA id: AMCG00007176


Basic Information

Item Value
RNA id AMCG00007176
length 345
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00007176
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6121702 ~ 6122376 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTGCTGCGCGTCTGTCCACGGTGACACAGACTGTGGCCTCACCAACATCTCCTTGGCGCTGGAGAGTGAGGAGTGTGGCAACTGTGTCACCATCAACACCACCGCATGTGCCGGACACTGCCAGACACAGGACCCTGTGTTTAAGAGCTCCATGGCCCTCATAACCCAGAATAGCTGCAACTTCAAGGAGGTCTCCTACACCACCATCAAGCTGCACAACTGCCTGACCGGAGTGGAGCCCTCCTTCACCTACCCCCTGGCGCTGAGCTGCGAGTGTAGCCAGTGCAACACGGACAACACAGACTGCGCGGCGGTCAGTTCAGGGCCCCCCGAGTGCCTG

Function

GO: NA

KEGG:

id description
K05250 FSHB; follitropin subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27114 lncRNA downstream 133380 5915072 ~ 5988322 (-) True G21646
TU27012 lncRNA downstream 400160 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 559494 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 598025 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 602951 5517227 ~ 5518751 (-) True G21537
TU27225 lncRNA upstream 218403 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 396747 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 443841 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 443841 6566217 ~ 6569739 (-) True G21756
TU27299 lncRNA upstream 513207 6635583 ~ 6638309 (-) True G21786
AMCG00007172 mRNA downstream 33661 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007173 mRNA downstream 67638 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007170 mRNA downstream 225117 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007168 mRNA downstream 262435 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007167 mRNA downstream 279835 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007177 mRNA upstream 234634 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007185 mRNA upstream 533037 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007184 mRNA upstream 553290 6675666 ~ 6676981 (-) True AMCG00007184
AMCG00007188 mRNA upstream 567204 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007189 mRNA upstream 619321 6741697 ~ 6756583 (-) True AMCG00007189
TU27173 other downstream 107533 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 301418 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1064296 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1072182 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1072863 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 1377071 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2270820 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4064938 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 7229141 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7823267 13945643 ~ 13946065 (-) True G22931

Expression Profile