RNA id: AMCG00007177


Basic Information

Item Value
RNA id AMCG00007177
length 1050
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00007177
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6357010 ~ 6372398 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATCCCAGTCACTGCAGCGCACCCTCGAGTCGACATGACGAAGCGTGCCGCCCCGGCAGGGAGCGGTCCGGCCGGGGAACGGAGGAGAAGGACAGGTCGTGGCGAGTAATGTATCGGGTCAGTGCTGAGGCCGTCCTGCGCTACTGTGGTCTGGGAAAGACATACAACACGCCAGCGGTCTGTCAATTAGAGTTAGGAAGTTCCCAGCCCAACATCAGTCTGTTCCATCTCATCTCTGCGTTGCGTTCCCCCTTGCCTCTGTTGTCTTCCGGGCGCTGGGAAAGGGGCGTACAGGTGCAGCCCGTCCTGGGGAGGTTCAGCGAGTTGGCCGGCCTGCTATCCTCTCGGGGGCTGGAGCCCGGGAGCCTGGACGGGGTCCTGCTGGATGCGGGTTGCTCCTCCATGCAGTACCTTGACATGCCCACCGCTGCTGACGTGGTGAACGCTTTAGATCAACAGGCGCTTGCGTCCATCCTAAGCACATACGGGGAGGAGAAACACGCCAGGAAAATAGCTTCAGCGATCGCCGAGGCACGCAGCGTCTATCCCATCGCCAGAACACAGCAGCTTGCCAGCGTCGTCGCAGGTGCCTTCTCTTCCTCTGCGCTCTACGCCCGGAAGGACATGCTGCAGCGGCCGGCCCACATGGCCACCAAGACCTTCCAGGCGCTGCGCATCTTCGTGAACGACGAGCTGAACGAGCTGTATGCCGGCCTCCGCGCCGCAGAGTCCCTTCTGAAACCCGGGGGCCGCCTGGTGGTCCTCACGTTCCACTCCCTGGAAGACCGCATCGCCAAGCGGTTCCTTCACGGAACAGACGTGGCCGGGCCGCACTACCGCAGCATCCGGCAGAAGATTCGACAGGGCCGGGCGGAGAATGAGGACCGCAGGgtggaggaggacgaggaggaggaggaggaggacaagcCCCTGCAGAATGCCCAGTGGTGTCACCTGCAGAAGAAGGTCATGACTCCGCTCTCTGAAGACGTGTGGGAAAACCCCCGGGCGCGTTCGGCCAAACTGCGCGCGGCTCGGAAGCTGTGA

Function

GO: NA

KEGG:

id description
K03438 mraW, rsmH; 16S rRNA (cytosine1402-N4)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27225 lncRNA downstream 15839 6340779 ~ 6341171 (-) True G21722
TU27114 lncRNA downstream 368688 5915072 ~ 5988322 (-) True G21646
TU27012 lncRNA downstream 635468 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 794802 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 833333 5521615 ~ 5523677 (-) True G21536
TU27243 lncRNA upstream 146725 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 193819 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 193819 6566217 ~ 6569739 (-) True G21756
TU27299 lncRNA upstream 263185 6635583 ~ 6638309 (-) True G21786
TU27300 lncRNA upstream 263185 6635583 ~ 6638059 (-) False G21786
AMCG00007176 mRNA downstream 234634 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007172 mRNA downstream 268969 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007173 mRNA downstream 302946 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007170 mRNA downstream 460425 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007168 mRNA downstream 497743 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007185 mRNA upstream 283015 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007184 mRNA upstream 303268 6675666 ~ 6676981 (-) True AMCG00007184
AMCG00007188 mRNA upstream 317182 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007189 mRNA upstream 369299 6741697 ~ 6756583 (-) True AMCG00007189
AMCG00007190 mRNA upstream 391826 6764224 ~ 6778550 (-) True AMCG00007190
TU27173 other downstream 342841 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 536726 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1299604 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1307490 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1308171 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 1127049 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2020798 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 3814916 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6979119 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7573245 13945643 ~ 13946065 (-) True G22931

Expression Profile