RNA id: AMCG00007184


Basic Information

Item Value
RNA id AMCG00007184
length 516
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00007184
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6675666 ~ 6676981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGACTGGTCTCGCCAGATGCCTCTCTAGAGTGAAGCCGGGCCTCCATGGGCTGCGGCTGCTCCAGAAGGCAACGAGAGCTGGGCATCTACCAGTCCAGGACCCGGTGGCACCGGGGGTGAGCCGCTGGCACCAAACGGCCGCCGCCCCCCTGCCGGAGGGGGTGAATTCCAGGATCCGGCGGGTCCGCGCGCTGGACGGGGAGCGCCTGGTCAGTGTGCAGTGGGAGGACGGGTCGAGCAGCCTCTACCCCTTCGTGTGGCTGAGGGACAACTGCCAGTGTCCACACTGCTTCCTGCGGTCTGCCCGGGCGCGCAGCCTCCTCCTGACCGAGCTGGACGTCGACACGGGCGTGGACAGGGTGCTGCTGACCGAGCCCACCAAGGTGTCCGTCATCTGGCCCGACCAGCACATCAGTGAATTTGATGCAGATTGGTTGAAGAAGAGATGCTTTTCCCCCTCGGCACGACAGAAGCAGCAAATGGAGCTCTTTCTGAATGGTAGGGACAAACGG

Function

GO:      GO:0008536

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27301 lncRNA downstream 30788 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 37357 6635583 ~ 6638309 (-) True G21786
TU27300 lncRNA downstream 37607 6635583 ~ 6638059 (-) False G21786
TU27263 lncRNA downstream 105927 6566217 ~ 6569739 (-) False G21756
TU27322 lncRNA upstream 10503 6687484 ~ 6689109 (-) True G21803
TU27327 lncRNA upstream 27428 6704409 ~ 6704662 (-) True G21807
TU27417 lncRNA upstream 647443 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 1076433 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 1223821 7900802 ~ 7901175 (-) True G22077
AMCG00007185 mRNA downstream 15404 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007177 mRNA downstream 303268 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007176 mRNA downstream 553290 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007172 mRNA downstream 587625 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007173 mRNA downstream 621602 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007188 mRNA upstream 12599 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007189 mRNA upstream 64716 6741697 ~ 6756583 (-) True AMCG00007189
AMCG00007190 mRNA upstream 87243 6764224 ~ 6778550 (-) True AMCG00007190
AMCG00007191 mRNA upstream 250619 6927600 ~ 6943044 (-) True AMCG00007191
AMCG00007192 mRNA upstream 284749 6961730 ~ 6967694 (-) True AMCG00007192
TU27173 other downstream 661497 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 855382 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1618260 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1626146 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1626827 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 822466 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1716215 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 3510333 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6674536 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7268662 13945643 ~ 13946065 (-) True G22931

Expression Profile