RNA id: AMCG00007185


Basic Information

Item Value
RNA id AMCG00007185
length 915
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00007185
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6655413 ~ 6660262 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGAATTATCTGCTTTTAACATCCCGCTGCTGGAATTGAGCCCATTCTCATTGCAGGAGTCTGGGATTCGTTTGCTCCCAAACCGGCACTACTGGGGCTCCGAGCTGCAGATTCCTACCGCCAGCTTCGAGGAGGTGCTGACGGACGACAAGGCTGCCTATGCCTGGCTGGCCGCCCTGCGCAGGGTGGGCATCGTGTACTTGAAGGGGGCCCCTGTGGAGCAGGGCCAGGTGGCCCGGCTGAGCGAGAGGATCGGCTATCTGCGGCTCACTTTCTACGGACACACCTGGCAGGTGCAGGACAAGGCCGATGCCAACAACGTGGCCTACACCTCCGGGAAGCTGAGCCTCCACACCGACTACCCCGCCCTGCACTACCCCCCCGGGGTCCAGTTCCTGCACTGCATCAGGCAGGCCCAGGCGGGCGGAGAGAGCGAGGTGGTGGATGGGTTCCACGCCGCCAACCGCCTGAGGGCTGAGAACCCGGAGGCCTTCCGCATCCTGACCTCACTGCGGGTCGACTTCACCGACACCGGCGCCGACTACTGCGACTTCAGCGTGCAGTCCAAGAACCGCATCATCGAtgtTGACTGTGACGGCCAGGTCGTCCGGATCAACTACAACAACGCGACGCGCGACTCGGTTCTGGACGTGCCTCTGGACCAGGTCCAGCCCTTCTACTCGGCGCTGAAGGCCTTCGTGGAGCTCATGTGCCGCCCGGAGAGCACGGTCACTTACCACATGAAGCCAGGCGACGTGGTGACCTTCGATAACTGGAGGTTGCTCCACGGCCGCCGCAGCTACGTCTCGGGTCCCGGCGACAAGAGGCACCTGGAGGGGGCATACCTGGATTGGGACGAGGTGATGTCCCGCCTGCGGATCCTGGAAAGAGCCATCCGCGGGGAGAGCTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0045329 carnitine biosynthetic process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K00471 BBOX1; gamma-butyrobetaine dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27301 lncRNA downstream 10535 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 17104 6635583 ~ 6638309 (-) True G21786
TU27300 lncRNA downstream 17354 6635583 ~ 6638059 (-) False G21786
TU27263 lncRNA downstream 85674 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA downstream 85674 6566217 ~ 6569739 (-) True G21756
TU27322 lncRNA upstream 27222 6687484 ~ 6689109 (-) True G21803
TU27327 lncRNA upstream 44147 6704409 ~ 6704662 (-) True G21807
TU27417 lncRNA upstream 664162 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 1093152 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 1240540 7900802 ~ 7901175 (-) True G22077
AMCG00007177 mRNA downstream 283015 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007176 mRNA downstream 533037 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007172 mRNA downstream 567372 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007173 mRNA downstream 601349 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007170 mRNA downstream 758828 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007184 mRNA upstream 15404 6675666 ~ 6676981 (-) True AMCG00007184
AMCG00007188 mRNA upstream 29318 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007189 mRNA upstream 81435 6741697 ~ 6756583 (-) True AMCG00007189
AMCG00007190 mRNA upstream 103962 6764224 ~ 6778550 (-) True AMCG00007190
AMCG00007191 mRNA upstream 267338 6927600 ~ 6943044 (-) True AMCG00007191
TU27173 other downstream 641244 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 835129 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1598007 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1605893 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1606574 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 839185 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1732934 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 3527052 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6691255 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7285381 13945643 ~ 13946065 (-) True G22931

Expression Profile