RNA id: AMCG00007190


Basic Information

Item Value
RNA id AMCG00007190
length 1788
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00007190
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6764224 ~ 6778550 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAATCTGCAGTTGCATCACAGGCAGGCGGTGCGTATTTATCCAGGGCTGGAGACTCACAAATCCCTGAGCCATGTGCTCATAATCCTCAGCGATGCCTCACCTTCTGCTCTGGTGAGTGCTAGTGTCAGCGCTGTAGCGGAGGATCTCTGGGCCGCGCGCGACTCCCCGCCGGCGGTGTGCGATTCCACTCTTCACAGCCGCGTTTTAAGAGCATATGTTGTTCGCGGCTTTAGAGTGGCACACTGGAAGGAGAAGGATAATGAAATGCTGACTCCAGATGCGTCTGAGTGTTTCGTATCTGTCAGCTGCACCGGCGCGCCTCTCTTCCCTCCAGTGTTTCCAGTCACCTTGCACCGATGCTGCGCTAGTCATCCCCATCAGGCATCTCCCGCTCCAACACAGCCACGCTACTCCGCACTGCGCCAGGCAAACGAGACTGAAACAAGCACATACGACGTCAGCCAAATGGAAGAGGATCATGGCGGCAAGGATTTGTACGCAGAGGAATCGGAGCTGGGGGGGTATGACTCCCGGACGGACCAGTCGCTGCTCATCCAGAAGAACGTCGCCCGGCGGAAACTGGAAACACGGACAGAGTCGCTGCAGGTACCTCCTTCGCCCGACGTGTCGTGTTTTCTAAAGGGGTGTGGCCGAGACCGGCATGAGAGTAACCCTGAAACTTCAGTGCCTTCGGGGCTGTTTTTCCGAGATGGGAAGAAGCGCATCGATTACATCCTGGTGTACAAGAAGTCCAACCTGCAGGTAGAGAAGAGGTGCACCTTCGAGAGGAACCTGCGAGCAGAAGGCCTGATGCTGGAGAAGGAGCCGTCAGTGACCAACACTGACATCATGTTTGTGAAGATCCACGCTCCCTGGGACACGCTGTGTAAATACGCGGAGCAGATGAACATTCGGATGCCGTTCCGGTTTCAGAGGAGGTGGCGGCAGCTGAAGAGTTGGCTCCCACGCAACCCCATGCAGCTGGACAAGGAAGCGCTGCCCGACCTGGAGGAGACTGACTGCTACACGGCCCCCTTCAGCCGAGCGCGCATGCACCAGTACGCCCCCGCCGCCCCGGCAAACCCCCGTATTGTTTACCTGCGGATCTGCTCACCTTCCTCCTGGGACGACCACTGGCACACGGGTCTCTGGGTTGGACGTTATCGAGTGGCCGCTGTGGTGTGGGACCAGGAGCTCACAGAACGCTTTACAATCAACAACAAAGAAACCTTCTTCTCCAACTCCACGAGGAGCAGGATTGTGCACCATGTACTGCAACGCACCAAATACGAGGACGGCAAGTCCAAAATGGGAATAAACCGGTTACGAGGCAACGGGACGTATGAGGCGGCCTTCCCTCCACATGAGGGCAGCCACAGGAGCCGACACCCGATCAAGACACACGGAGCCCAGAACCACCGGCACCTGCTGTACGAGAGGTGGGCGCGCTGGGGCATGTGGTACAAGTACCAGCCCCTGGACCTTATCAGgcGGTACTTCGGGGAGAAGATCGGCCTGTACTTCGCCTGGCTCGGCTGGTACACCGGCATGCTGATCCCTGCCGCTCTGGTCGGCCTCTTCGTCTTCCTGTACGGCTTCTTCACGATGCACTCCAGCCAAGTGAGCATAGAGATCTGTGAGGCCAACACCACCATCATGTGTCCCTTGTGTGAGCGCAACTGCATGCCCTGGAAGCTGAGTGACAGCTGCGTCTATGCCAAGGTCACACATCTCTTCGATAATGGAGGCACCGTGTTCTTCGCTATTTTCATGGCAATATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27327 lncRNA downstream 59562 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 75115 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 119346 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 125915 6635583 ~ 6638309 (-) True G21786
TU27417 lncRNA upstream 545874 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 974864 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 1122252 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 1135054 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 1202798 7981348 ~ 7984510 (-) True G22111
AMCG00007189 mRNA downstream 7641 6741697 ~ 6756583 (-) True AMCG00007189
AMCG00007188 mRNA downstream 74024 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007184 mRNA downstream 87243 6675666 ~ 6676981 (-) True AMCG00007184
AMCG00007185 mRNA downstream 103962 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007177 mRNA downstream 391826 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007191 mRNA upstream 149050 6927600 ~ 6943044 (-) True AMCG00007191
AMCG00007192 mRNA upstream 183180 6961730 ~ 6967694 (-) True AMCG00007192
AMCG00007193 mRNA upstream 201401 6979951 ~ 6987935 (-) True AMCG00007193
AMCG00007197 mRNA upstream 443801 7222351 ~ 7245987 (-) True AMCG00007197
AMCG00007199 mRNA upstream 505173 7283723 ~ 7307598 (-) True AMCG00007199
TU27173 other downstream 750055 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 943940 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1706818 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1714704 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1715385 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 720897 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1614646 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 3408764 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6572967 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7167093 13945643 ~ 13946065 (-) True G22931

Expression Profile