RNA id: AMCG00007191


Basic Information

Item Value
RNA id AMCG00007191
length 5987
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00007191
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6927600 ~ 6943044 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATATTGACCGTACACCTTCGGCTCAGTTATAACGCGAATTCCCATTACTTGTTCACAGGACATCCCTAAAATTTTGAAGATTGTCACAACAAAAGCAGCCTCTTCGAACGCGGCGGCGATGAAGAAAGATAACGTGGAAGTTAAGGAGTGCCAGACACAAGAGAAAGCCCCAAGAGACAAGAACGACGTTCTAAAGTCGACAGaagaggacaaaaaaaaactggacaGCAGTGACAACAAAAAGACGAGTGAAGGAGTGTGACTGGAGactggggggggaggggggtcttaacggaaaaataaaaccctgaaaaagatgaaaacaatCCAATTGTAAATACTCTGAGGACTTGCGTTTGAACTTTCTGTATGCTATGATGTCATTTTCGCTCAGTCGAATCTCAAGGCATGCCTCCCTCAcgctcatacacacacacacgcagataAACATGCACACGCACTCACAACTCGCCGCTGACAAACTTCACGTTTCATGGAAAGGGGATCCCCTGGTGAAATGAAATATACCGCAGAGGCATGCATTCTAACTCGCTCTGTTttccttcattcattcacagttttctttttcctgttttattttctttgcaaccAAAATATCACTGTGTCATTTGAAACCAAGTGTCTGAAATTGATCGGATACGTGCAGCGATTCCTAGTGAGTCTCCACTTCACAGCTCTTAGGAGACACGAAAACCCTGCAATGTTGtcgttttctgtttgtttgtttattagttttttccatgtcacactTTCCTTACGGAGGAAGGTATGAAAGATACTTCAGATACCTGTTGGATTAATTCTTGCCTGTATATGCTGTAGAGTAGTCGATTTCAGTGTAGGAACAATGTAATCAAGTCCTGACGCAGGAAAGTGTCGATGTATGAACTCTGTGTTATGGTTGCTGTGCAGTAACTGCGACCTCCTTGCGTAGTTATTATATCAATGGGAAAGACTTGTCTGTGGAGAGGATGGACATCTCTAGATCATCCATCACTCGAAATCAAAACCTCGTCTGTTGCAAATAACATAAAACGTAAACATGCTTGATGTTGGCTTCTCGTTTGACTCTGGTGTCTGGCTTCTCACCCCCGGGGAAGACAGACACCAGAATAGGGGCTTTGCGTCTCCGAGTGACAGACGGATTGAGGTTTTGACTTAATCCGGGCCTAAGCCAGTCGTTTTTGGAGCTTGCGGGGCATATGCACTCCTAGACTGAATATTCAACGTCAACTCTTAGTCCTTACCGTGAACATGACAACCCAGACAAGAATGATGGtacaaatacagttttcaaATCTATTAAACTCATTAACTCTTTCCCTTTTGTTAAGACAACAGACTTTTAAATCGCTACCACCTTTAAATTGCTACCATGCTAGTTCCAGGCTTTGTGTGCCATCAATAATGTGCACACCTCCGTGTCTAAAGATGTGGACTGCATCCTTGAGCGATGCTTCTCTTTGGTGCAGCCCGGCTCCTCTGGCTGCCGAGAAGTAATGGCTTTAATCCTTTGGCGTATTTCATTTGCAGGAGCTTATTCGTACTGTCAGACGTGAAGACATCTAGAGGAGCATATCATAGCGTCCCGAAATATCACCAATGGCCTCGGCCCCACGGTGCAGCAAGGTCACAGTTTCACAGCTTTGTGAGGCTCTGATTTCACTCGGAAAGTTCACTGCTTCTCGGTTTAACCCGCCGTTGCGAATCTCCCGGGTGGGAACGGTTTCTCTTCCCAATCCTGAGCTTTTATCTGTCTGTCAGAGAGGCTGGAGACAAAGGTCCTGTTCTCGGTGGCTCTGGAGCAGTGTCTACGCCGTAGTTAAAACACTAGTAGAGAAAATCATGTTTTAGGTGactaattattattgctatCATGATGTTACCATCAGCCCTGTTTCCTGTGATTTCTTTTGCCTGCAGTATGAGCTGCATTAATAAGTAACTACAGCTTCCCTTAGTACTTTTCACAAGGCTGAAGTTGTCCCTGGGgaccaaattaaattacacaacaAACATACTGCAGATACTCCAAACAGCCACACGTCCTCATACGTTTTAATTAACTTCCTTCATtcaaataatcataacaataacaataatactaataataataaaggagcaattacaattaaaggcaattaaaaaaagggCAAAGGCGAGAatctattgtattttttatttgtttatttgatgaCTTGATCCATCCattaagaatacatttgaataaattaaaggaagagggggggaaaaaagctacAGACTTCAAAGCTCGCTAACTGCATGTTTGGAGGGTCATGTCAGTGTGAGGCACTTAAATACAGATTTGTGAATGTCAGGCCGAACAACGTCGAAGCCGGTGATGAAAATGTACCTTTTCAATTCCCTCATGGGACAGGAAAGGTGACATTCATGCTAATCTGTGTATGATTCTGTACTATACAATACTGAAACCCTGTGTTGATTtcctttgaattaaaaataaaccagtagcagaattatttaaaatatgttatgtaTATGGAAAAGATAGAAAGAACACAAGCACACTGCTGTAAAGGTTTTTATCTCTCTGATTCTGGATATACAATTTAAAGCTTGTACCGGCGAACAGCGTGAGTAGCGAACACTGTTTAAGATGTCCTCCCAATTATCTTTAAAACAGAGCCGCGTGACACACCAGAACACGCACACGAAAATCACATCGTTAACTCGGAAAGCATTTCTGTACATAGCATTATAACCGTGGTATCGCACTGTTCTCTCACACGTGTTGGCCAGTAGACTTCTCTGCGCTTCTTTCTCTGTAAATGAACATGTTGCCCcgtgtgttttttaaaagcaataatttaaaagtacaaaaaacaaaaacaaaaaaacataaaaagtgtgCGTTTTTATAATTCAATTTGTAATATGACTCTTGCAAGCTGGAGTTAGAGGACTGGTGGTGTGGATTAATGGGCTGTGTGGGATACCTGACaatcaattttttatttgtgatttgttagaaatttgtattattcctgtttttggggGCGTTGGTTGTTTAATGACAGATGATGGCATTATTATGAGTCCATTATAGCGTCAGAGCTCTTACTGTAGAAGAGGTGCCCCCTTACTTTTGGATAACAGACCCTAATGgtctgtttttactttaaaatattctgtCCACTCTTCCGGATCACCCACAATTAATACCCCATGCAGATGTTTTCATCACACCTGGGAATCTGCCTGTATAGGAGTGTCCCATTCTTTTTTCCTATATATGTCATTTTAAGTGACTTGTGTTGATTGAtcgctttgtgtgtttgtttttttctcactttttatttgtatttatgtttcatcGAATCATTAATTCAAGGAGAATGTAACGAGCTTTGCTTTGATGGCACTTGCATGGTGAATGagatattgtattcatttatgtgtTTTACTTAATCACTTGTTATTAAATGAACGCACCCCAGGCGCACTCTTAAAGGAAGGCACAGAGCTGCGTCTCGTATAACTCTGCGCTGAGACAATTGcatttgtatgtaatttaatCCCACTCGGAAATCAGATCCTTCTTGCAGACGCTGTGGTCGAGCGCAGTTTCCCGCAGAATGTTTCAATCTGGTTGTAAATGTTCAACGAGTGTTCTAATCATACTCTAAACATTTTACTCGCGCCAAAGGTGAGATAACCCGTCTGCCTCTTGGGTTTTTTACGTGGGCCGTGTTTGCTTTACTGTGAAAGAGCAGCTGTCAATCCGACGACCTGCAGATGAAGCAGAAATCTGCCGCGCGTTTAGTTCCCACGAGGCCGTCACAGGAGAAGGCCGGACAGGCtggttcacacacacagagagtgGCGACACGAGACAATGGATGTATGTGACATCCATTGTTGCTCTCTTTTGAACACGCACGGCAGGATCATTGATGTCTGCATGTAAAGCGCGGGTTTACATGTAGAGGTGGCCTCGGGTTTCCTCTGTTCTCCTAATTGTTCTGTCAAACTGTCATCAttctcttgtgtttttgtgatcGACTCTGCCCTTGCATGTGGccgttgtttgtttgtttgtttgtctgtgcaTTATTGGACACAAAGCTGATTCTCCCGACCagaacacgcacacgcacacacacacgcacacgcatccCCACGgcataaatcaaaacatcacGTCTAAACCCCCATCAGAAGTTTCGACCTTCACAACGGCACTTTctagttttctttctctcacagCTGGGCTGCCAATTACACCTGAACCCCACCGATGATGCCCTTAAGCAGTTTGTTTGTCagctgcacaaaataaatagggGGGTGAAGCAAACGGGGCTGTCAATTAAGTtacagagctcagctggaaagGGAAAACTCCCCGGCACAGGTGTCATGTGACGCGCAGGGTTTCGAGACCCCTTTTCGGGAACGGAAAACATCACAGTATCTCCTAATTGCTGTACTAGAGGACCTGACTTTACGGACCTAATTAGACACAGAATGGTCCGCTGTGACAGCCAAGCCCCCCAGCAGGCGGCGCACACCGGTCTGACTTAACTACGAATGTCAGAAGGCATGTGTCACCACCAGCGGAGGAGACCAAAGGCCACACACGGCATCCTGTCACACATCTCCCATAGAAGGAGTTTTGTGATCCACACCTCCTCCTGATTTGCTCCCGTTGCTTCTTTAACTCGGCGCTCGGAGAAGCTGGCGGGTCGGTCGGCCGCGGTGAGGGTGTCAGACACTAACACCTGTATCCTTGCTGCCTCGCCTGAGGGGTGCCGATATCCTCGCTTTCATCCCACCAGTTTATCCCCCAAATTCAAGCGTCATGATGGTCTGAAATTCTGGTGGTTTTAATTTGCGTTTGAATGGGTTTGAGAGTTTGAAGTGATATACTCCATAGCATAACAAGGACGTATGCTTGGGGACTTCAACACCTGTATACAGATAGACCGGATGGATATCTTGGTTAAAATTGTACGGTTctctaaaaaaatgtaaacccaGAAGTCTCTGGGGCCCAGGGACATTTCATCCCTCCGTCCTGCAGTGTGGGTTTGAGACTGCAGAGCTGTAGTATCTGGGAGTCCTGCTTAACCTTGAAATGAAGAGACGGTAGCGCTGTCCTCTTGATTGTGATTTTTACGCCACTTTGGCTTTTTATACGTGGTCCGTTTTCCATGCATAGACTTGCTCTAGTTGCTCATATTTCGGTATGTCTACGCTTAAGCTGTCGCCGCATTACAGTTATGAAGGCATTGATGagtttaattattacaattctGATCAGTGCATATTTGAAGAAGTTAAACAGGAAATGTTCAATGAACTGCTTTTgttgatggtggtggtgattTGTTTCGCCTAAaggtttttgttcttttcacatttgtgttgtgttttgctcTTTTACCCCCGTCGCTCTTTTATTCCACTACATTTATAAGGTAGATCAGTTGTGTACATTTGCAATGTTATAGGTCCTGTTTGTATGATATGATCACACAATGCACAATACACAAAGCATATGTCATGCTATTGAATTGCAGTGTAATGACAGACATTTTAACAGCGATTCCATCCCAAGAACTCAGTGACAATGGGTTGTGTGACCTTACCTGTGTCTGATACCGTGGTTCAGCCGTGCTTCTACCACCTGTGTCTCGCATTAAACTGAAATAGATTTACATTACAATGCTGACAGAGACGAAAGCTAAAGCTAACAACAACATTgggatctttttttattttattttacttttatcgTTTTGTCATCTTGTAAAGTACAGGTAATACTGGCAGATCTAACTACGAAGAATTTTTGGAGTCTcctttttttccagtttaagGGGGTTGTAAAGTTTTAGACCTTAGGGAAGTTTGTTTACTGCTTGTTCTGAATTgaatttattgtatattgtccttctgaaataaatactttggaGAATA

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27327 lncRNA downstream 222938 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 238491 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 282722 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 289291 6635583 ~ 6638309 (-) True G21786
TU27417 lncRNA upstream 381380 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 810370 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 957758 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 970560 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 1038304 7981348 ~ 7984510 (-) True G22111
AMCG00007190 mRNA downstream 149050 6764224 ~ 6778550 (-) True AMCG00007190
AMCG00007189 mRNA downstream 171017 6741697 ~ 6756583 (-) True AMCG00007189
AMCG00007188 mRNA downstream 237400 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007184 mRNA downstream 250619 6675666 ~ 6676981 (-) True AMCG00007184
AMCG00007185 mRNA downstream 267338 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007192 mRNA upstream 18686 6961730 ~ 6967694 (-) True AMCG00007192
AMCG00007193 mRNA upstream 36907 6979951 ~ 6987935 (-) True AMCG00007193
AMCG00007197 mRNA upstream 279307 7222351 ~ 7245987 (-) True AMCG00007197
AMCG00007199 mRNA upstream 340679 7283723 ~ 7307598 (-) True AMCG00007199
AMCG00007200 mRNA upstream 366712 7309756 ~ 7317222 (-) True AMCG00007200
TU27173 other downstream 913431 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1107316 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1870194 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1878080 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1878761 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 556403 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1450152 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 3244270 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6408473 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7002599 13945643 ~ 13946065 (-) True G22931

Expression Profile