RNA id: AMCG00007193


Basic Information

Item Value
RNA id AMCG00007193
length 450
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00007193
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6979951 ~ 6987935 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAAGTGGACGTCAGTGGATTAATGTCTGCTCTCCCTCTTCTCGTTTGTGTGTCAGACAGGGCTATGAGGGACTGGAAAGGAAGCTGAAGGAAGTTTTCATGGAGAGGAGTGGCATCCTTCGTCAACTCTCCAAAACATCAAAGGAGCTGGATGGCATTAAAGGGAACCTTCAGTCTCTGAAAAATGACGAGACGGTGGCCAAGAAGGATGTCCAGCGAATCCTGGACCTGAGCCAGAAGCAAAGGGAGGAGATGAAATCCCTCCAGGAAGCCCTTCAGAAGCAGCTAAACGAGGCTACGGAGAGGGCGGAGAAGCAGCAGGCCACGGTGAGGATTCGCAATCCCCCGCCCATCTTCTCTGATGTGTTTgagctgttttatttaaacgGCCACTGCTGTGGACTCACTTCCCCCACGGTGGTGTTTCTACAGCCCAGACAGCACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27327 lncRNA downstream 275289 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 290842 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 335073 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 341642 6635583 ~ 6638309 (-) True G21786
TU27417 lncRNA upstream 336489 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 765479 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 912867 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 925669 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 993413 7981348 ~ 7984510 (-) True G22111
AMCG00007192 mRNA downstream 12257 6961730 ~ 6967694 (-) True AMCG00007192
AMCG00007191 mRNA downstream 36907 6927600 ~ 6943044 (-) True AMCG00007191
AMCG00007190 mRNA downstream 201401 6764224 ~ 6778550 (-) True AMCG00007190
AMCG00007189 mRNA downstream 223368 6741697 ~ 6756583 (-) True AMCG00007189
AMCG00007188 mRNA downstream 289751 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007197 mRNA upstream 234416 7222351 ~ 7245987 (-) True AMCG00007197
AMCG00007199 mRNA upstream 295788 7283723 ~ 7307598 (-) True AMCG00007199
AMCG00007200 mRNA upstream 321821 7309756 ~ 7317222 (-) True AMCG00007200
AMCG00007202 mRNA upstream 331253 7319188 ~ 7323900 (-) True AMCG00007202
AMCG00007201 mRNA upstream 339573 7327508 ~ 7342341 (-) False AMCG00007201
TU27173 other downstream 965782 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1159667 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1922545 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1930431 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1931112 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 511512 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1405261 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 3199379 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6363582 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6957708 13945643 ~ 13946065 (-) True G22931

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU430002 True 3602 TUCP 0.40 2 CI01000180 1907662 ~ 1915963 (+)