RNA id: AMCG00007199


Basic Information

Item Value
RNA id AMCG00007199
length 3763
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00007199
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7283723 ~ 7307598 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctctgctcgtGTGGGGGGTAACTTTCATAACCTCATCGTTCTCTTGTTCTTTTTATGTAAAGAATAAAATCTACAAGCACAATCCCCATCAGTATGAGCGATCATATTTCACCGTAATATGATACTTTAACAATTCTTCTCATCGACGGGAGCACCATCTTCGGGCAATGGATACGGTCAAGGAGAGAGTGTTTGCCCCCAGCAAGCAGGGGCTGAAGAACCTGGCTGGGAAGTCACTGGGGCAGCTATACAGggTCCTGGAGAAGAAGCAGCAGACGGGCGAGGTGATCGAGCTGACGGAGGATGGGCGCCCCCTGCAGAGCGCGGAGCGGAAGGCGCCCCTGTGTGACTGTACGTGCTTCGGGCTGCCCCGGCGCTACATCATCGCCATCATGAGCGGCCTGGGCTTCTGCATCTCCTTCGGCATCCGCTGCAACCTGGGCGTGGCCATCGTGGGCATGGTCAACAACAGCACCGTGCACCAGGGCGGCAAGATCATCATCACCGAGAAAGCCAAGTTTAACTGGGACCCGGAGACGGTCGGGATGATCCACGGCTCGTTTTTCTGGGGCTACATTGTCACTCAGATCCCCGGCGGGTACATCTCGTCCCGACTGGCAGCTAACAGGGTTTTCGGGGCAGCTATCCTCTTCACCTCCACCCTCAACATGTTCATCCCATCTGCGGCACGGGTGCACTACGGGTGCGTCATCTTCGTCAGGATACTGCAGGGGCTGGTGGAGGGTGTGACCTACCCTGCCTGCCATGGGATCTGGAGCAAGTGGGCGCCACCACTGGAAAGAAGCTCGTATGCAGGTGCAGTTATAGCCATGCCGTTGGCTGGGATCCTAGTGCAATACTCCGGGTGGTCTTCTGTCTTCTACGTGTACGGGTGCTTCGGGATCTTCTGGTACATGTTCTGGATTCTGGTGTCCTATGAGAGTCCGGCAGTGCACCCCACCATCACCGAGGAGGAGCGTAACTACATCGAGGAGAGCATCGGCGAGAGCGCCAAGCTGCTGGGGCCTGCCGATAAATACAAGACCCCGTGGAAGAAGTTCTTCACCTCCATGCCTGTCTATGCAATCATCGTCGCGAACTTCTGTAGGAGCTGGACTTTCTACCTGCTGCTCATCAGCCAGCCGGCCTACTTTGAGGAGGTGTTTGGCTTTGAAATCAGCAAGGTTGGTATGCTGTCCGCTGTGCCCCACCTGGTCATGACCATCATCGTGCCCATCGGAGGACAGATCGCAGACTACCTCAGGAGCAGGAACATCCTATCCACCACCACCGTGCGCAAGATCATGAACTGTGGAGGTTTCGGCATGGAGGCCACCCTGCTGCTTGTGGTGGGCTACTCTCACAGTAAAGGCGTCGCCATATCGTTCCTGGTCCTGGCAGTGGGCTTCAGCGGATTTGCCATATCAGGGTTCAACGTCAACCACCTGGACATCGCCCCGCGCTACGCCAGCATACTGATGGGCATCTCCAACGGTGTGGGCACCCTGTCAGGGATGGTGTGCCCTCTGATCGTGGGGGCCATGACGAAGCACAAGTCCCGCGAGGAGTGGCAGTACGTGTTCCTGATCGCTGCCATGGTGCACTACGGCGGCGTCATCTTCTACGGCCTCTTCGCCTCCGGGGAGAAGCAGCCGTGGGCCGATCCTGAGCAGACGAGCGATGAGAAGTGCGGCTTCATCAACGAGGACGAGCTGGCGGAGGAGACGGGCGACATCACGCAGAGCTACAGCAGCTTCGGCCCCGCCAAGACCTACGGGGCCACGACCCAGGTGAACGGAGGCTGGCCCAACGGCtgggagaagaaggaggagtTTGTGCAGGAGGAGGCGCAGCAGGGCAGCTACAGCTATAAGCAGGAGGACTACTCATAACGCACCGCCGCCGCTGCGAGTGACATCGAGTAGATATATTTTGTAGTGTTCGTGAGttccaaaaaacacaaaaagaaaaaaaaaaaaaccttgtggTTCGTTCgcacaaattaaaaaggaaagaaaaaaactaagtGGTGTAAAACATATCAACATGGCGggttgtaaatgtataaattaatatatcaatTTATTTGGAGTGCAATCTGTATAAAATCGTGACACATTTTTCACCTCATTACTGAAGCTCCTTCACTGTAGAAGAATTAGGACAGATTTATAGTCTTTAGACCCCCAAACTGTATTGGGACAAATAAACTTGTGCCAGACATCGTAGAGACACAACCAGAAGGTTCTGCACCGTAGTGTCCATCCGTAGTTCCAGACCTAGACCAACAAGCACCATTTTTAACGtgattaagttttatttttttattgcacgTATAGAAAAACTTAGACggtgtttttaatgttgcagGCGAGTCGTGTTCGTTTCattcgttttttatttatatatctgtttCTTTTCGGACTCCATTTTTAAAATTCCGTTCCTGTAAGAAAACTGTGGATTTTTGTCTTCGATCTTCAAGAGCACATGAACTTCGACAAGTacaaatattattgttaataatgatgatgatgatgataataataataatattcaaaggCCATATTTTTGACGGACAGTAACATTTCAAGGGCTTGTCAGTGAATACAGGTCGTGTACTTTGAATGTTTTGGGTGTGTCTGGAGGACTAGCGCAGGAGGCAAACCCAACAGCAGCCATCTAACCATCGAAGGCACTGGTCGCACTACCGGAAAGCACAGTCTGACACTTTATAGTCACTTCATTACGCGTTGGTTTCGATTTGTTGATGCGTTCGGTAGAAACGCTTAAATACGGAGGCTTTTCGAAGCTGTGCCAAACGCACTTCCACGTCTGATGTCCATCGGTGATATTATGCACGGGTCGGCAGATTAACGACGACAACACAATTACAGAAATAGAATAGACttacaaaacaatgacaaaggAAGGACCAAGCAGTTGCTCGCAGCCGTTTTGCACAATTAACCAAAGGTAACATCTAGCGTAGGATCGTAGGAGGACCGTCGGTCATCAGTCACTGCTTCTGCAACTCGCCTCCATTTCGTATCTGATGGATCTGCTGCATTTGGTGTACAAAGCAATAATCCATGGTTTCCACTCGGCACCATCCCAGCCATCGTCAGTGTGTGCGGCACAGGTGTAACTAGCTATcggtgttttcttttcttatagAGTCGTGTTGATTatacaactaaaacaaacacaagaaacgAGTAACAGGTGGAAGCATTGCCAGAATCAGACAGATTAACGAAGCGGATGAGTCCCACACTCTCTCTGAACAAGgctgtctttcctttccttgATTGTTTCgctctgtttctttcttttctttctctgctcCCTACTGAAATCCAGGCATTCGTTCGTGTGCTGTTTGTTCCCAGTGATCTGTCTTGGAGGGTGTGctaaagttttttatttttttatggttttattttattggattgAAACGTGTCGTGTTAGTGGTTGGAGTCGTCCCGTTCCCCCCCCCTTCAGTCCAGAGTTGCAATATATAATAACGTAAGGATTGTTTGCAAAGGTgtttatcattaaaaaataaatacattattaataataataataataataataattataataataataataataaaacagatgttCTATATGACCTGTAGGTCCCATTCCTGCTTCCTGCCTCACGGTGAAGTAAAAGTGTGGTTTAAATGGCTTATTTTGCTGTGTTCAGTGGAGAGGTTTGTTGCTGTCTAAAGTGTTAATAAAATGCTC

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0007601 visual perception biological_process
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12302 SLC17A6_7_8; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6/7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27327 lncRNA downstream 579061 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 594614 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 638845 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 645414 6635583 ~ 6638309 (-) True G21786
TU27417 lncRNA upstream 16826 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 445816 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 593204 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 606006 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 673750 7981348 ~ 7984510 (-) True G22111
AMCG00007197 mRNA downstream 37736 7222351 ~ 7245987 (-) True AMCG00007197
AMCG00007193 mRNA downstream 295788 6979951 ~ 6987935 (-) True AMCG00007193
AMCG00007192 mRNA downstream 316029 6961730 ~ 6967694 (-) True AMCG00007192
AMCG00007191 mRNA downstream 340679 6927600 ~ 6943044 (-) True AMCG00007191
AMCG00007190 mRNA downstream 505173 6764224 ~ 6778550 (-) True AMCG00007190
AMCG00007200 mRNA upstream 2158 7309756 ~ 7317222 (-) True AMCG00007200
AMCG00007202 mRNA upstream 11590 7319188 ~ 7323900 (-) True AMCG00007202
AMCG00007201 mRNA upstream 19910 7327508 ~ 7342341 (-) False AMCG00007201
AMCG00007206 mRNA upstream 76822 7384420 ~ 7396801 (-) True AMCG00007206
AMCG00007205 mRNA upstream 101050 7408648 ~ 7423202 (-) True AMCG00007205
TU27173 other downstream 1269554 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1463439 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2226317 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2234203 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 2234884 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 191849 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1085598 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2879716 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6043919 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6638045 13945643 ~ 13946065 (-) True G22931

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000122_00699264_00715272.mRNA True 1884 mRNA 0.51 12 CI01000122 699195 ~ 715272 (-)