RNA id: AMCG00007200


Basic Information

Item Value
RNA id AMCG00007200
length 2358
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00007200
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7309756 ~ 7317222 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCTAACTAGGAAGTGGACTCTTGTACTAGCAGGTGGGCAGACGTGCGCAGTACACGCAGACGTGCGGGCTGCGCGGCGCCAGATGTTGAGCTGCTGTGCGATGTGGGGGGGCGCGCTGGTGGTCCTGGCGGGGCGCGCAGTTTACGGCACCGAGGAGGAAACGCCATCCGGGGGCGCCGAGCCAGTGCGGGCGCACACCCTGTCCCCCAACGTGTCCATCTCTCGGACCCAGGCCTTCCCTCCACAGTCCTCCTACACAGGGACCAGTGCGGGACTGTGGATCCCCCTCCGCCCCTCAGACCGACAGGCAGACTTCTGCCTGCGCGCCTCGGAGAACGTGACGGCGCTGGTCACGGCCGTGCTCTACGGGGAACAAGATCCGGTCCCCGGGGCCTGTAACATGGAGTTCCGGATGGAGGACGACCCCAATATCCACCTGCGCTTCACCACTCACGAAACCGTGACCGAGTTTGCTCCGGCAAATCTGGGAGTGGCCAGGGGCCAACCGCCTCCGTCATGTGACACTGGCCAGGGGACCCACACAAGATGGAGGCTGACTTATGAGCTTTACCAGTACTTCCTGCCAGAGGGAGACCTCAGTGAGGCGAGTCTGTTTGACGGTCTGGCGAAGATGAACTCTGTGCGGGAAGTTGAGCAGAATGGGAGGAAGGTCGCCTCCCTGACCTCACTGGACAAGACTCGGGTGTTGGGGAACGCCTACGCCGGCATTGGGGTGGTGTTCTGTGTGATAGTCCGGGACCCCCTGCTCAACACGTCCTCCCTCTACGTCCCCGCCTCCACCTACAGCTGCCACTTCTCCTCCCGGCCCCCCCAGAGCTGTCAGATACAGGGTCAAACTGCGACCCGGGTTTTCTTCACTGTCCTCGGGGTCTGTGGTTTGTTCGTGTGCTTCATGGGGCACCGGTTCCTCACGGCAGAGTCCTTCTTCCTCGGGTTCCTGACCTTTGGCTTCGTTGCGTTCGCGGTGCTGGGACGGTTTTCCGGGCAGAGCTATGAGATGTGTCTGGTGTACACGGCCGTGCTGGCGGTGGTCGGGGGGGGGCTGTGCGCTCTGTGCTGGTGGCGGTTCGGCGCCCCCATCCCTCTGACCGTGCTGGCGGGCCTGGCTCTGGGTCTGGTCCTGGCTGCAGGCATCGCGCTCAGCCCAGTCGTCAACGAGCCGCCGCTGCGCTCTTACCTGCTGTTCTGGGTTTGTGTGACGGGCTTCTCGGTCTTGCTgaccctgctgctgctgtcctggCCCAGGACCCTCATCATCCTGTCCGGCGCCGTGGTCGGCTCCTACATGGCCGTGTTCATGCTGGGCACCTTCCTCCCCTCCGGCCTCTCCTACGTCCTGGTCAGTGCGGTGCGGAGAGCCGTCAGCCCCCCCTTCTCTCAGGCCATCGTCTTCGTGCCGTTCCAGACCAGGGACTTTGTCCTGACCACGCTGTGGGCCGTGCTGGCGGTAGGGGGGGCGGTGTCTCAGCACTTCCTCACACGGGACAAGCCGCACTTCCCCCCCTGTCCCTACCGGAGCCGGAGCAGCCAGACCCCCAGCGCCCCCCAGGTGTGCGACGAGAGGACCCCTCTGCGGGGCCGTGGTGTGCAGGTGTGCGATCACACGGGACTCGGCCGCAGTGCGTGGTGTTGTGGAGCCGCACTGCCCTCTGGTGGggactgagtgtgtgtgacgGAGCGGGCCTGCAGCTGCACGGGGGgagtgtgttgttttattactgCTGTCCTTTCCTGTTGTTACTCACTCAGGACGAGAATCTGAGTTTAGGGATTGTTTTgggcatgtttttattttaatgccttctggcttttttgttttactacttCTCCTCATGAAAACGAATTTAAAGTGTATGGATGGTGTCCATAGTGGCCCTGAATTGTGTTGTCCCGAGTCACGCTCAGACCCCCCCACACCCGCACCCAGCCTCGcatacccccccccacccaggcACTCTCTCCGCACCGTGTTCAGGGACAGCGGGGGGCTGTGGCAATGATGGCAGAGAGCACAGGGACGGGACTGCGGTTTTGGGGCCGTTGTcctgaccccccacccccaaacacaCATCCCCCTGTCCGCCTCGCCTGCCCACAGCTCTGCTCACCCCCCAAACCCAGACGCAGGTTGGCCCCACACCGCAGCAGCACAAACTCAAACTGACCGATTCTGTGTTAGATTTCAGCGTCTGAGTCTGAGCCACAACAACAATAGTAACGGCAATAACTCACAATAGTGATGAAAGAATTCCAGGGAATACAAACCTATTCTGtccttcagttttgtttcacCACTGCgatttttatacttttataaatacattttcttttctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27327 lncRNA downstream 605094 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 620647 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 664878 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 671447 6635583 ~ 6638309 (-) True G21786
TU27417 lncRNA upstream 7202 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 436192 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 583580 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 596382 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 664126 7981348 ~ 7984510 (-) True G22111
AMCG00007199 mRNA downstream 2158 7283723 ~ 7307598 (-) True AMCG00007199
AMCG00007197 mRNA downstream 63769 7222351 ~ 7245987 (-) True AMCG00007197
AMCG00007193 mRNA downstream 321821 6979951 ~ 6987935 (-) True AMCG00007193
AMCG00007192 mRNA downstream 342062 6961730 ~ 6967694 (-) True AMCG00007192
AMCG00007191 mRNA downstream 366712 6927600 ~ 6943044 (-) True AMCG00007191
AMCG00007202 mRNA upstream 1966 7319188 ~ 7323900 (-) True AMCG00007202
AMCG00007201 mRNA upstream 10286 7327508 ~ 7342341 (-) False AMCG00007201
AMCG00007206 mRNA upstream 67198 7384420 ~ 7396801 (-) True AMCG00007206
AMCG00007205 mRNA upstream 91426 7408648 ~ 7423202 (-) True AMCG00007205
AMCG00007207 mRNA upstream 111497 7428719 ~ 7429020 (-) True AMCG00007207
TU27173 other downstream 1295587 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1489472 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2252350 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2260236 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 2260917 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 182225 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1075974 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2870092 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6034295 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6628421 13945643 ~ 13946065 (-) True G22931

Expression Profile