RNA id: TU27417


Basic Information

Item Value
RNA id TU27417
length 3319
lncRNA type sense_over
GC content 0.46
exon number 1
gene id AMCG00007201
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7324424 ~ 7342341 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTCGTGGGGCAGGACTTTATCTCCTTTTTGTGAGCAGCACGGCACGTTGCCACCCGGCTTCCTCGAGGTCTTTCCAATCAATTCACGCATCGCCCGCGAAACAAGGACGCGCTGTAGAGCATGGGGCCGTCCACTGCAGGGGCGGCCGACACGACGCCGAGAACACAGACCGCACCGACGCAGAAACGCCTGAGCTCCAGCCGCtcgctgcttttgttttaatgcaacaCTAAAGTAATCGTTCTTTTCTCTTATtagtggttatatttatttgtattcaacattttatttaaacacacacataatttatATCCCGGGCTGCATGTTGTAAGAGTTGCAGAGTCGGTCCTGCTGGCCGAGCGTGAGGTCTGATCTGTCCTCGACGCGGGGACAAATCAAACCCATCAGGCGGCAAGAGCAGAACCATGGAGCAGCTGAGGCATGGGCTCTCAGGCCCAGGCATTATCAAACGTTTCCACCTACCTGCAGATCGCAAGTGACAATCTTGTCGCCCATTGTGGTTTCATGTCTCGTCAGAACCACTTTCAACAAGTTGTAAATAAAAGCACGATACGGTTACAGGTCTCGGGTAGGTTGAAAACACAGTTGacaggtgtgtgttgtgtgtgtgcagtagaAAAGTGACCGGAGCATCTGAGAGTATCCGATACTGAGTCCAATGTGGACTGGGCCGCAGTAAGACTCTCCATTCGAGACGCACTCGGACCCGAGCACGCCTTGCTTTGCTCCCCCCATTTTTCTGGGGGAAAAGCTCTACCTGAGCTTATATCAGCATTGGAGAAATGCACCCTAAAAGCGATATTCCGCTTTTACACGTTTACCTCAAGTACCATAGAGTAGAGTGCTGGTAGTAGAGCGTCTCCCGCTGCGCTTGTAAACATGTGGATAAATGTTTGTGTTAGAAAGTTAAAGTTGACTGTGTGCTTCGATTGAACCTCCCTGTGCAGGAAGCATTGAATATCCGTATGAAGCATCCAGCTGTTGCCAGGGCTGTACAGATGTGCTCGAGTCCAACGTGCAGCTTGTAGAAAGAGCTCAGTGGAGTTGGGGGGATATAGAGCGTCATTGCAGGAACGGttctctgctttttttgtttttgcttttttattattggtaCTTAATCTCGACTGTTTGTGCGTCGGTTGACTGTTCTCAGTGGTGTAGCGGTGAGGTCATCATGTGTGGATCAGTGTGAGGAAAGGAATGGGCACATGCGTGTCAAACCATGGCGATCAGAAAGGCGTCTCTGTGGTTGCACAGGTGTTGATGCCAGCTGTGATGCGTGTCTGCATTCAGTGCTTTTATTGGATTTAGTGAACCTTAGGAATCCAGATACCCATGTTTTGGGCAGATTACTGTTAATTATAAACACCTGTACGGTGCCTTGTTCGTAATATTTTACAGATGCACAGAAAACACGAGTGCTGGAGCTACAGCCAGGCCCGGCGGTGCAGCAAGTCTCTGCACCCCTCCGTGCTGCTCATTCTGCAGTGTTGTGACTGGACATGGGGCAGGCGGTTATGGGTGCTGAGGGGTGGGTTACTGAGAGACTGCAGAGGGGTCTTGTCACATGAGTGACAAGCAGAGAACCTGGATCTCCAGTGGTGTTCTGTGATGCCAAAGACCCACCCTGACTCCCCGGCTCTGCTCTGTGCCAGCGCTCTGCCGGCCGTGGGAGTCGGACTCGCTGACGAGCGCCAGTGTCGCAGCCGGGCCTCAGTGACGCTGCGCATACGCCACTGTTCAGGCTCAGTCTGCTCTGTGCTTTTATCAGCACGGCGCTCCGCGGACAAATGCTCCTAATGTGCCTGTGTTTGCCCAAGTGTTCGAGTTAATGAAAGCCTGTCATCGGGGGGGGGCTCTCCGTGGCATTACaggcttttcttgttttgttttgtttgcagttaaaaaaagaaacacacacatttatacacatcTAATCTGTTTACTCTTCCAGATGTAAAACAGGACAAAATGAATGTCCTTTCACTTTGCAGAAGCACTTAATGAAAccgtgggggggggttgtgacACACTAGACTTCACTGTTCCCGGCTTTTTAATCATAAACACACTACATATCAGTGTTCACAGGCAGAGAGACGGCAAGACTCGCCATTCCTGTCTGTCCAATATCAGTCTTGCCAGGCTCGTTGTAAATTCTAGTTTCTTAAatgaatgattttatatatatatctatctttCTTTAACAAGCAATCTACTGGTGGTAGACGTCCGTCcattctgttctgtattttgctGTTCCCTCCCGGCCTGAGGTCAGAGTTTAGCTCGGCCGACCCGACAcacattgtgtgttgtgttcctGTCCTACTGACGTGGTTTTCTCGCCCCTCTCCTGTGAAGTGCACGTCTTCTCCAGCACTGCCTTCGGGAGCGCGGTACTGAGAGAACGTTGTGTAGTTCTGTCTAGCTGAGcggtggaaaaaaaatcaaaccaaagaCATTATACTATAGGAGGCAAAGGTGGAGGAACGGTCTTTTATATGATTTCAGCCTCTGGACAAAAGAGGGGCGAGTTTGTACGGCATTACACTTCTTCTAAGCAATCGTTTGCCATTTTCCAATCCCCGTACTAACTTCAGCTATTAATGAAAGCAGCTGCTGTGACTGTGTTTTTTATGAAGCGTCAGAGACCCGGTCCGGTCCACTGACCTCACGGCTGTTAATATATGCAATAGTTCTGACCGGCTGGGTTGGTTTTCCGGACCGTTTGGTAATAAAATGATTTTAGGAACCCGTGTCAGAGATGTCGCACACCTATGCATCGAGGAGCTGCGACTGTTATTGACATTTAAAACGCTCGCGTAAATAGTTCACAGAATATTATGAGACAAAAATCTTATGCCTTAAAGTCTCTGTTTACTGTAATAATAtcggaattattattttttccctattctgtttttatttaaacaaaagggTAATTGTGTCTGAGGTCccactgtgtttttaaaggtcTGATGACTGATCGATTACTGATtcgttattttaaatgttcagattGTTTTCTATATAACCTCAAATCTTTGTTCAAAGCTGGTTTACATTCTGTTGGGTATCGAGTCTTGCCTTAAATGTCGATGTGACTGATGAGAGATTCGGTCAAGTGTAGGACTGAcatcttttgtttatttctctaaaaaatatatatataatttttaaaaaaatgtacgtTTATTCCTAATTGTTTTCACTCTAATGTATGGAATGCACCAGAACCTTTATAATGAATATTGAtgatatggaaaataataaaagtatttgttGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27327 lncRNA downstream 619762 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 635315 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 679546 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 686115 6635583 ~ 6638309 (-) True G21786
TU27300 lncRNA downstream 686365 6635583 ~ 6638059 (-) False G21786
TU27647 lncRNA upstream 425672 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 573060 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 585862 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 653606 7981348 ~ 7984510 (-) True G22111
TU27820 lncRNA upstream 924285 8252027 ~ 8252664 (-) True G22191
AMCG00007202 mRNA downstream 524 7319188 ~ 7323900 (-) True AMCG00007202
AMCG00007200 mRNA downstream 7202 7309756 ~ 7317222 (-) True AMCG00007200
AMCG00007199 mRNA downstream 16826 7283723 ~ 7307598 (-) True AMCG00007199
AMCG00007197 mRNA downstream 78437 7222351 ~ 7245987 (-) True AMCG00007197
AMCG00007193 mRNA downstream 336489 6979951 ~ 6987935 (-) True AMCG00007193
AMCG00007206 mRNA upstream 56678 7384420 ~ 7396801 (-) True AMCG00007206
AMCG00007205 mRNA upstream 80906 7408648 ~ 7423202 (-) True AMCG00007205
AMCG00007207 mRNA upstream 100977 7428719 ~ 7429020 (-) True AMCG00007207
AMCG00007204 mRNA upstream 132583 7460325 ~ 7468151 (-) True AMCG00007204
AMCG00007211 mRNA upstream 232968 7560710 ~ 7561451 (-) True AMCG00007211
TU27173 other downstream 1310255 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1504140 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2267018 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2274904 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 2275585 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 171705 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1065454 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2859572 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6023775 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6617901 13945643 ~ 13946065 (-) True G22931

Expression Profile