RNA id: AMCG00007202


Basic Information

Item Value
RNA id AMCG00007202
length 870
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00007202
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7319188 ~ 7323900 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATCTTTCCGTTTCAATGGAGCCATCTGGGCACAGAGGCCGAGCAAATATTGGCCCGTGTTCAGTCAGCGTGCTCTGCTCGGGGCCGTGATTGAGCCTCCAGAGACGGACTTCTGCATCTCGCGCTCGCCAGGCATGGAGCCGCTGCTGCTGGTGGAGCTGTACCTGATCCCGGGCTTCTTCCTGGGGGTGCTGGTGGTAGGCATCGCCCTGAACCTCCTCTCGCTCTGGATCTTCTTCCGGCGCTGCAAGCAGTGGAACCGCAGCACCCTGTTCCTGTGCAACCTGACCCTGGCGGACACCTCCATGGTGATGAGCTACCCAGTGGCGCAGATGGCCACCACCCAGCACTGCCCTGGCACCAACAGCACCATCTGCACCATGTATGTGTTCCTGGAGGACACCAGCGAGAGCCTGCCCTACTCCCTGTGCTGCACCGTCATCGGCTTCCTGCTGCCCTTCACCGCCatctgctactgctactgccgCAGCGCCCGTGCCCTGAGCCGGCAGCGCCACTTCCCCCGGCACGCCAGCAAGCGCCGCAAGCTGGCGGGGGCACTGTACTCGGCACTGTTCATCTTCGCCGTGCTCTACCTGCCCTACCACGTGACGCGCAACCTGGTCATCGTCATGCGGGCCGCCCACCCCCGCCACGGTGCCAGCTCCTACCCGGACGTGGACCTGGTCTTTGCGGTGGAGATGTGCATCTGCAGCCTCAACACCTGCATCAACCCGCTCTTCATCTTCCTCACCGGCAGCGACTTCCGCCTCCACTTCAAGTCCGCATTCTCCGGGTGGCGGCCCTGCCGGTGCAGGAAGGGGCGAGGAGCCGGGCCCCACGTTGCCACCGTGTGCCCCCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27327 lncRNA downstream 614526 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 630079 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 674310 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 680879 6635583 ~ 6638309 (-) True G21786
TU27417 lncRNA upstream 524 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 429514 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 576902 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 589704 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 657448 7981348 ~ 7984510 (-) True G22111
AMCG00007200 mRNA downstream 1966 7309756 ~ 7317222 (-) True AMCG00007200
AMCG00007199 mRNA downstream 11590 7283723 ~ 7307598 (-) True AMCG00007199
AMCG00007197 mRNA downstream 73201 7222351 ~ 7245987 (-) True AMCG00007197
AMCG00007193 mRNA downstream 331253 6979951 ~ 6987935 (-) True AMCG00007193
AMCG00007192 mRNA downstream 351494 6961730 ~ 6967694 (-) True AMCG00007192
AMCG00007201 mRNA upstream 3608 7327508 ~ 7342341 (-) False AMCG00007201
AMCG00007206 mRNA upstream 60520 7384420 ~ 7396801 (-) True AMCG00007206
AMCG00007205 mRNA upstream 84748 7408648 ~ 7423202 (-) True AMCG00007205
AMCG00007207 mRNA upstream 104819 7428719 ~ 7429020 (-) True AMCG00007207
AMCG00007204 mRNA upstream 136425 7460325 ~ 7468151 (-) True AMCG00007204
TU27173 other downstream 1305019 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1498904 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2261782 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2269668 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 2270349 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 175547 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1069296 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2863414 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6027617 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6621743 13945643 ~ 13946065 (-) True G22931

Expression Profile