RNA id: AMCG00007206


Basic Information

Item Value
RNA id AMCG00007206
length 1716
RNA type mRNA
GC content 0.57
exon number 15
gene id AMCG00007206
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7384420 ~ 7396801 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGGGAAATTCGTGTTTATGTCTTCACTACCGAGGGTCGAACTGCCGGAAGAGGAACAGAGGGAGCTGAAACAGAAGTGGGCACGATGGACGGCCTGCCTCACCTGGCAGCCGATCACAGAAGTCAGGAATTACTTTGGGGAGAAGGTGGCTCTGTACTTCCTGTGGCTCGGCTGGTACACCTTCACCCTGATCCCTGCCGCCATCGTGGGGATCGTCGTGTTCCTGTACGGCCTGGCCTTCTTCGACAGCAACCCCCTCATtaaGGAGGTGTGTGAAGCCGACATCATCATGTGTCCGCTGTGTGACAAGAAGTGCGGCGTGTGGAACCTGTCTGAGACCTGCACCTATGCCAAGGAGGAGCTGATCCTGGAGCTGGTGAACAACCCCAACTGCAAGCCAACTCCGTACAGCCACTCGTACCTGCGCAGCACCCTGGTCCTGGTGCTGGTCACCCTCATGCTGGTGCTGATAATCGGGCTGGCCATCGGGCTGGTGGTGTTCAGGGTGGTGGCGACCGTGGTGCTGTCCGAGGGGCAGTGGGAGCTGCTCAGTGAACACGCCAGCACCGTGGCTGTGATGCTGGGTGCCGTGATGCACTACCTGACCATGACCATCATGACCAAGAAGACGCGCTCCTTCGCCGCCACCGAGAAGAGCTTCACTGTGAAGATGTTCACCTTCCAGTTCTTCACGctcttctcctccctcatctACGTGGCCTTCTTCCTGGGGCGGATCAACGGGCGTCCCGGAGGGTATGTGAGGATTACAGGGAAATGGCGTCTGGAGGAGtgtcatCCCAGTGGCTGTATCACTGACCTCTTCATTCAAATGGCCATCATCATGaagaagaggaagccCAGGAAGAAGCGAAGCTGCAGCCCCTGTGGCCGGAGCACGGAGTGGGACGCCTGCGACGACCATGAGCCACCTTGTGACCCTGAGCTGGACACCTGGCTCACCAACTACAACCTGAATGAGGTCAACGCCTTCAGCCTCTTTGAGGAGTTCCTGGAAATGGTGATGCAGTTCAGCTTTACCACCATCTTCGTGGCGGCGTTCCCACTGGCACCTTTGCTGGCTCTGATCAACAATGTCCTGGAGATCCGACTGGATGCCATCAAAATGGTGAGCCTGGAGAGGAGGCTGGTGCCCAAGAAGACCAACAACATCGGCGTGTGGATCAATGTGCTGGAGTGGATCGGGGTGCTGGCAGTGATCGCCAACGGGCTGGTCATCGGCATCACGTCTGACTTCATCCCGCGGATGGTGTACAGGTACCGATATGGGCCTTGCGTCGGCAGAGACGCCACCGGCCTTGAACATCAACGTGACCCACTGCAGGTGAGGGGACGGCAcgataattacatttcttacacCCAactccagggcgacttacagtaCATCAGGCAGGGCACGGGGCGGGGAGTGAGTCAGTccgtgagcgtgtgtgtgtgctttgtgctCCTCAGTTACAGGGACTACAGAAACAATGAGGATTACAGCTACACCTCCCAGTTCTGGCTGATCCTGGCCGTGCGCTTTGCCTTCGTGATCCTGTTCGAGcATGTGATTGTCATCTGTAAGTTCATCGTGGCCTGGTTCGTCCCCGACATCCCCCAGGTGGTGAAGAACGACCGCCTGCAGGACAAGCTGCACCGGCTGCAGAAGGAGCTGAGaaaTATGGAACAGAGATCATCTGACGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27417 lncRNA downstream 56678 7324424 ~ 7327742 (-) True AMCG00007201
TU27327 lncRNA downstream 679758 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 695311 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 739542 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 746111 6635583 ~ 6638309 (-) True G21786
TU27647 lncRNA upstream 356613 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 504001 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 516803 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 584547 7981348 ~ 7984510 (-) True G22111
TU27820 lncRNA upstream 855226 8252027 ~ 8252664 (-) True G22191
AMCG00007201 mRNA downstream 42079 7327508 ~ 7342341 (-) False AMCG00007201
AMCG00007202 mRNA downstream 60520 7319188 ~ 7323900 (-) True AMCG00007202
AMCG00007200 mRNA downstream 67198 7309756 ~ 7317222 (-) True AMCG00007200
AMCG00007199 mRNA downstream 76822 7283723 ~ 7307598 (-) True AMCG00007199
AMCG00007197 mRNA downstream 138433 7222351 ~ 7245987 (-) True AMCG00007197
AMCG00007205 mRNA upstream 11847 7408648 ~ 7423202 (-) True AMCG00007205
AMCG00007207 mRNA upstream 31918 7428719 ~ 7429020 (-) True AMCG00007207
AMCG00007204 mRNA upstream 63524 7460325 ~ 7468151 (-) True AMCG00007204
AMCG00007211 mRNA upstream 163909 7560710 ~ 7561451 (-) True AMCG00007211
AMCG00007210 mRNA upstream 176501 7573302 ~ 7580896 (-) True AMCG00007210
TU27173 other downstream 1370251 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1564136 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2327014 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2334900 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 2335581 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 102646 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 996395 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2790513 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 5954716 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6548842 13945643 ~ 13946065 (-) True G22931

Expression Profile