RNA id: AMCG00007212


Basic Information

Item Value
RNA id AMCG00007212
length 3809
RNA type mRNA
GC content 0.63
exon number 19
gene id AMCG00007212
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7615156 ~ 7630176 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGCGCCGCAGGACCGCAGCACCGCAGGGGAATTCCTCTATCCGGGTTTCCTCTGGCCGGACTGGGAGCCTTCCTGTAGCCTGCAGACCCAGGTGCGtctacacacacagccacagcacAGGACCTCCACCATGACAGCCAGCGGAAGGGGCTTGTAATGTAAGGAGAAACTCTCTGCGGCCttgtggaggagagagagagagagagagagagaggcgggcGGCCATGGCCCGGGTGCCCGTTGTGCCCGAGTCCTGCACCCATGCGCTGGCGGAAGGAGACGCCCTCGATGGCCTGCTGTCTGCGCTGCGGCTCGACTCCAGCAGGTTGAAGTGTAGCTGTGTGGGCGTGTCCAGGCGCTGGCTGGCTCTGGGGACGTCGGCGGGGGGGCTGCACCTGATCCAGAGAGACGGCTGGAAACCCAGGCTCATACTGACACACAAGgaaGGGGCCATTACTCGGGTAGCCTGTTGTCCTCACGATGAAGATTTTGTTGCTGTGGCGACAAGtcaGGGCCTGGTGGTAGTGTGGGAGTTGCATTGGGAGCGGAGGGGGCGGCCGGAGCGGGCCTGTGTTTCCTGGGAGCACCGAGGGCGGAGTGTGAGCGCGCTGTGCTGGGACACTGCCGTCCTGCGCGTCTTTGCAGGGGACAGTGCTGGCAGGGTCTCCTGTCTCCGCATCGCCTCCCCCAGACTGGGCAAGGGAGCAGCGTTCGTGATGTTCCCAGTGCAGACCATCACCACAGTGGACTCGCACGTCGTCCAGCTGGGCTTCCTGGACGGCCGACTGCTGGTGTCCTCGCTGTCTCGCTGCTACCTGTGCGATACGGAAAGGGAGAGGTTCTGGCGGATTGGGAACAAAGAGCGGGAAGGGGAGTTCGGAGCCTGCTTCTTCCCGCCaggccgggggggggggcaggcggCGCTGGTGTACTGCGCTCGGCCCGGGTCGCGGTTCTGGGAGGCGTCGTTCAACGGGGAGGTGCTGAGCACACAGCAGTTCAAACAGCTGCTCTCAACCCCTGCCCTGCCCCTCGTCTCACACAGACTGGAGCACCTGAAGGCGCAGCTGGATGGCTCCACCCACCGCGAGCTGATTGGTCAGCTGGAGGAAGTGATATCGAGGCTGGAGCCCTTTGACTCCGCCTCCAGCAGCAGGAGGAGCAGCATCTCGTCACATGAGAGCTTCAACGTGCTGGACTGCGGGATCTATCGTGTGATCAGCAGGCGGGGCAGCCAATCGGATGAGGAGACCAGCTCCCTGGTCAGCCAATCGCTGTCGGAGGAGGAGAGGCTCAGAGAGTTTAGCTCCGTCCAGGAGGAGGAGCCGGCCGAGCAGGAGCCCCAGCCCAGCGACCGTGTGGAGGCAGACAGATCGGATGCCACCCCGCCGTTCCTCCCCCTCCCATTCCGCCCCAAACCCCCCCGTGCCGCGCTGCAGGCTGTCCGTGACAGTGTGTCCAGCTTCATGAAGAAGACCACGGAAAAGATCACCACACTCCAGATGAACTCTGACCTCTGGCCTCGACCTGACCTTAGGGAGGGGGGTTCACAGGGGGCAGAAGTCACTGTCACCATGACCACcTCTCAGATTCAGGATGTGCTGGTTCTGTTGGACCCAGCCTGTCTGGGGGGGGTTCTGGGGGAGTGGCTGCCGGTGCTGGAGAGAGTCCTGGGTCCTGACCCAGCTGACGCCAGTGACCCCTTGCGACCCCCGCCTCCTGCCACAGGAGGACAAGGACTCCCTAAacagacagaggaggaggaggagggggaggaagacGGCACACagtctgcagagagagaggggacccGAGGGAGAGGGGGTGTGAACAACatcacagaggaggaggaagaggacagagtcttagaggaggaggagggagacagGCCAGGAGCgaaagagggagtgagagagggagagcgaccCGGAggcagggacacagagagagggggaggtggCAGCGAGAGGCAGACTGACAGGGAGGCCGACTCCGCAGCCCCAGGCTCTCCCCCCCGTCCCCAGCGCCTTCCGCTGGAGCCGGTCCGGGCCTGCCCCCCCTGCACCCTGCCCCCCCTGCTGGACGCTGACCTGGCCCAGCTCGCCTCGCTCTGCCTGGAGCTGGGCCACTTCCCTGGCCACGGCACAGACGACAGAGATGTCACGGACACCGAGCCGGGGTCCCGGGCCGCTGGGTTCCTGCAGCGGTTCTTCTTCCTGCTGGACCCTGAGCGAGCCCACCAGGCCTGCCTGCTGCGGTACCAGAACCAGCCCAGGGTCTGGGCCTCCTTCCTGGCGGGGGTGAGGGAGTTGACCCGATCCAGCCCAGTAGTCCCGGTTCTGGAGAAGGGGGACCTGCTGAGGTCTCTGCGCCACCTGAGGGAGCTAAAGCCCTGGGCCGCCCCCCCGCTGCTTTCTCACCTGCACAGGCTGTACGAGAGACATGGAGAGCTTGCTCTGCGATCCTTTGGACAATTCTATCCCACAATCATCCCTGCTGATGTCATGGCCATGGCCAAGAGGAGCCACTTCCTGGCTTACCTGGACAACCTCGTCCAATCACAGCCCGAGGACCAGAGACCCACCCTCCTCGCCTCGCTGCTGCAGCCTGAGTCCCTGCGTCACGACTGGCTGGAGCTGGCGCTATCCCACGATGCACCTCAGCAGGCTGACACCATGACCCCTGACGGCCTCCCCAGGTGGCGCTCTCACCTGTTCAGATGGGGCTACGGGCGCCTGCTGGCCCTGTTGATCCAGCTGCCGGCTGACCTGCAGGCCAAGCAGAGAATGGCGGAGTCCTGCAGGTCCCACGGgttcTGGCAGGGCTATGTGCGTCTGTGTTGTGAGCTGGAGAGGAGGACTGAGGTGTTTTCCACCATCGTTAGCCTGGATGACATAACTCTGTTGGACGGGCCCTGGGATGTGACGCCCGAAACCCTGGACGAATGGAAGCTCCTGCTCCGGCTCTCCCGGCACCACGGCGAGCAGCCCGGCTCCACCCATCCACCAGCTCGCTGTGGCAACGGACACGGCCTCGCCGACGGGGCCCCCGATTGGCCGAGCTGCGTCAGCCCGGAGAACGTGGTGCTGCGCCTGGCCCGGGCGGTGGGGCCGGACCGGGCCCTGGCGGCGCTGGGGGAGAGTGGCGAGCCGGCGGGGCAGCTCAGTGCTCAGGCGGCGCTGGTGTGCGAGACACTGAGGGTGGCAGAGACCCGGCAGAGGGCTGTGATCCAGGCCATGCTAGAGAGGTGTGACCGGTTCCTGTGGTCTCAGCAGGCATGAGGGGATCGGCCATGAAGCTGACGCACTGACCCGATGACAAATACGCAAACAatcccacactgacacacacactcccactcTCACCCAGGCACCAACCGGACACCCGCCACCAAGAGAGAGCACGAGGTGAAGCGCAGGAGGCCCCCGGCACGGGATTTTTCAGtcatgtatttctttgttttgcagcattttcctgttattgtgctttttttgtaaTGGGTATTTCTTTTAAACCTGCATCTCTCTCGGGAGCCCAGTGTAGGTGCGGTGGGGCTGGAGGCGTGATAACATCGACACTTAAAGCACAATTCAcagtgttgttatttatttatttattggagagCAGTGACTGCACTGggagcatttatttttaacttgtggGCGAGTTTGTTGTATGGGGACAGGAGGGCTGTGCTGGACCCGCTCTGCACTGGACTGgattgtgctgtactgtcctGGATGCCTGTTCCTGGAGCGAGTCGCACCCCTGCAGGTTTTACAGCTGGAGACACGGAGATTGGCGGT

Function

GO: NA

KEGG:

id description
K20191 HPS5; Hermansky-Pudlak syndrome 5 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27417 lncRNA downstream 287414 7324424 ~ 7327742 (-) True AMCG00007201
TU27327 lncRNA downstream 910494 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 926047 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 970278 6638997 ~ 6644878 (-) True G21787
TU27300 lncRNA downstream 977097 6635583 ~ 6638059 (-) False G21786
TU27647 lncRNA upstream 123238 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 270626 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 283428 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 351172 7981348 ~ 7984510 (-) True G22111
TU27820 lncRNA upstream 621851 8252027 ~ 8252664 (-) True G22191
AMCG00007213 mRNA downstream 744 7606583 ~ 7614412 (-) True AMCG00007213
AMCG00007214 mRNA downstream 23856 7584786 ~ 7591300 (-) True AMCG00007214
AMCG00007210 mRNA downstream 34260 7573302 ~ 7580896 (-) True AMCG00007210
AMCG00007211 mRNA downstream 53705 7560710 ~ 7561451 (-) True AMCG00007211
AMCG00007204 mRNA downstream 147005 7460325 ~ 7468151 (-) True AMCG00007204
AMCG00007215 mRNA upstream 2442 7632618 ~ 7639904 (-) True AMCG00007215
AMCG00007222 mRNA upstream 85028 7715204 ~ 7729044 (-) True AMCG00007222
AMCG00007221 mRNA upstream 114360 7744536 ~ 7747445 (-) True AMCG00007221
AMCG00007229 mRNA upstream 271997 7902173 ~ 7927369 (-) True AMCG00007229
AMCG00007227 mRNA upstream 298330 7928506 ~ 7934299 (-) True AMCG00007227
TU27501 other downstream 108281 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 1600987 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1794872 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2557750 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2565636 5042520 ~ 5049520 (-) False G21426
TU27830 other upstream 763020 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2557138 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 5721341 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6315467 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 8690821 16320997 ~ 16322651 (-) False AMCG00007365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048246 False 4125 mRNA 0.52 23 NC_007136.7 3148431 ~ 3192405 (-)