RNA id: AMCG00007215


Basic Information

Item Value
RNA id AMCG00007215
length 1508
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00007215
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7632618 ~ 7639904 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAGCTGGGCTTGGGGATGGCGTCCTCAGAGGAGGTGCTGCTGGTGGTGAAGCGCGTGCGGCAGAAGAAGCAGGACGGGACTCTGTACCTGATGGCGGAGAGGGTCGCCTGGGGGCCGGAGGGCAAGGACCGCTTCTCCGTCAGCCACCCCTACTCCGACATCCGCTGTCAGAAGATTAGCCCCGACGGGAAGGCGAAGGAGGACCCAGTGCTGTTCCAGCTGTACAAGGACCTGGTGGTCAGTCAGGTGATCAGCGCAGAGGAGTTCTGGGCCAATCGGCTCAGCCTGAACGCGGCTGACCATGCCCCCTCCAACAGCAAGCAGGAAGTGGGCATCTCTGCAGCGTTCCTGGCGGACGTTCGCCCGCAGACGGACGGCTGCAATGGCCTGCGCTATAACCTCACCTCTGACCTCATCGAGTCCATATTCCGCACCTACCCAGCAGTCAAGCAGAAGTACGCCGAGAACGTCCCGCACAACCTCACAGAGAAGGACTTCTGGACCCGGTTCTTCCAGTCCCACTATTTCCACCGGGACCGGATCAGCACCGGCTCGCAGGACCTGTTCTCCGAATGTGCCAAGCAGGACGAGAGAGGTGAGGCCGGGTCAGGGACGGGGAGCCAGAACCGGGCTGTTGACGTGCTGAATGACCAGGCCAGTGAGACCAGCAGCACTGATGGGAACTCCAGAGACTCAGACTTCTTCCAGCCGCCAGTCAAGAAGgTCCtgtccagcagcacagccagcaCTGCCATCGCTGCCCTGTCCCCTGGGGGGGTGGTGAAGATGAGGAGCAACCTGGAGAGGTTCCAGGGGACCAAGCTGCGCCCGTTTCAGGACAAAGTGCACCGGCAGTACTTCAGTACGAATCTGACCGCTCACCTGGAGGAGATGCTGCAGACGGCGTACAACAAGTTTCACGGCTGGCAGACTCGCCGCATGATGAGGAAGacctgagagaggaggaggaggaggagagagagagaggagagacggactacaggaggaagaggagggacaTGGAGACGCAACTCCTGACGCgtgggaaggaaggaagattTTGCCACAGCTGCTGTGTCAGGAAAAACAGACCCTCTCGGTTTTAAATTCCTGGGAACAAGAGATTTTTAGGAGTGTCgggatggagagatggagggatgaAGAGATGATGGGTGTCACAAGTCGACACAGATCTGCAGAGGTGGACAGGAAACCCGCCAgcgtttatttgttgtttgtttttcttttctttttaatttatattctcTTCAGTTCTGATGTTTTCTCTTCCCTGAGGTTTGCACACAAATATAGACACTGAGAgtgagaaggagggagggaaggagagagagggaaggaaggagggaggtttttttctgtctctcctaGAGATTACAAAAgttataattatacaaaacacaattataaatgtttctttgttttgtttcatttttgttttttaaataaataaataaataaataaagaacgtGCTGTAAAGGAC

Function

GO: NA

KEGG:

id description
K03141 TFIIH1, GTF2H1, TFB1; transcription initiation factor TFIIH subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27417 lncRNA downstream 304876 7324424 ~ 7327742 (-) True AMCG00007201
TU27327 lncRNA downstream 927956 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 943509 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 987740 6638997 ~ 6644878 (-) True G21787
TU27300 lncRNA downstream 994559 6635583 ~ 6638059 (-) False G21786
TU27647 lncRNA upstream 113510 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 260898 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 273700 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 341444 7981348 ~ 7984510 (-) True G22111
TU27820 lncRNA upstream 612123 8252027 ~ 8252664 (-) True G22191
AMCG00007212 mRNA downstream 2442 7615156 ~ 7630176 (-) True AMCG00007212
AMCG00007213 mRNA downstream 18206 7606583 ~ 7614412 (-) True AMCG00007213
AMCG00007214 mRNA downstream 41318 7584786 ~ 7591300 (-) True AMCG00007214
AMCG00007210 mRNA downstream 51722 7573302 ~ 7580896 (-) True AMCG00007210
AMCG00007211 mRNA downstream 71167 7560710 ~ 7561451 (-) True AMCG00007211
AMCG00007222 mRNA upstream 75300 7715204 ~ 7729044 (-) True AMCG00007222
AMCG00007221 mRNA upstream 104632 7744536 ~ 7747445 (-) True AMCG00007221
AMCG00007229 mRNA upstream 262269 7902173 ~ 7927369 (-) True AMCG00007229
AMCG00007227 mRNA upstream 288602 7928506 ~ 7934299 (-) True AMCG00007227
AMCG00007228 mRNA upstream 296358 7936262 ~ 7946941 (-) True AMCG00007228
TU27501 other downstream 125743 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 1618449 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1812334 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2575212 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2583098 5042520 ~ 5049520 (-) False G21426
TU27830 other upstream 753292 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2547410 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 5711613 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6305739 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 8681093 16320997 ~ 16322651 (-) False AMCG00007365

Expression Profile