RNA id: AMCG00007221


Basic Information

Item Value
RNA id AMCG00007221
length 1852
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00007221
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7744536 ~ 7747445 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGCTACTTCACAGCAGCCTTAACAACCTGAAAGCTTCTGGGATACCGTCTGGCCGCAGGCTCTATCAAGACTTATTTCAGTGGATTATTACCATCTTCAGGTTTCCAGCCAAAATGAAACTGCTGTTTCAGATTTGCTTTTTCTGCTGGTGTTTATTAACCATCATTGTCCTCAGTGTGGAGAGTGCAAAACTAGACTTGACTTCACAATTGAAAAAGAGGTTGAGCATTTGGGTGCAGAGCAGAACAAAAAGGGATGTAAATAGCCTGTCTGCATCGGAGATGAGTGAAGCAGAGTCTTTTAAAATGGGTTTCGTCAGACCAGATGATGTCAAGGACACTTTGAATCCCCATTCCAGcaACGATATCAATATCCGTGTGAAGAGATATAAGAGTTCAGTGAGCCAGTCGAAGGGAATGGGCTGCTCCTTAGGAACTTGCTCAGTGCACGACCTGGCACACCGGCTCTTCCAGCTGACTGATAAACATAAAGACGGCAGCGCTCCAATGGACAAAATCAGTCCCCTGGGCTACGGGAGGAGGAGACGATCCCTACCCGAGAACAGAGTCACCTTCCAGCTATTGGGGAGGCGGTTGAGACCCGCCTGGAAGAGCACCAACCGAGGAGAGAAACTCCGAGAGCTGCTGAGGCGGACATGAGCAGGAGGCGGCACAGCCAGTGCTGAAACTTTCTGACGAATTCCACAATTCTGCAGATGCCTTAGACTCCCGCCAAAGACCTTCCAGGCACATTCCTTCCACGGAGCGAAGGCAGGGTGGCTGTGTCTAGGAAGCCCGAAGATACAGTGTCAGAAAACcgacaaacaagcaaaacaaattattaataaaagcaaTCTTTAAAGGACAGAGACTGGGGTGACTAAGTCTGTGGCAGCACGAGAGgatgaggtggggggggggggcctgacagcacagcactgcagaactttcccccccctttttctttttcgttttcTGCAGGAGCGCTGATGAAATCTCACACTCAGCGGTAAAGACACAGACTCAACGCTATGCTGCTGCTCTTCCCCAGGGTATGAGCTGTCGAGGAAGTTTTCTAGGAAATAGAGGACACACTAGAAACTTCTCAACCCACACCTTGCACACATTTAGTGGATGATTCAGAAGAGGAGCACGGCTTtccaacaaacagaaaaaggacaaaatgatcttttcaacaacaacagcaaagagAGATCAATTATCTTCAGCTCTGATGACTCAAAATCCAGCTTTTATTTGCTCTgactgattttttatttttatttcttctcattgccgttttcctttttgtactttgttacCTAAGTAAGCTACATAAACCTGGTTTGATCCGTAACATCAACAATCCACATGTCAGATAATGCGGTGGACTTCACAAACAGGGCTTAAAAGCTGGTAATATAAAAACAGAGCGTTTGGACACTGTATGGGGGGGGGATTTCTATTTAGATTGCCTTGACaggaaatctaaaaataaacttgtcAGTCCATAAAGGATTGCATCATACTTGAACTTGATCTTTATAGAGAAATGTgcaatctatatatttttgttgccGGTGTGTGTATATTACATGTTAAAGTAtcactatttaattattttacatatctgTTTCTTGTAACTGTACTTATGGAGATAGACTTATTTTTATACGTGATATGAAATGTATAAGGGCattgtagctttttttttcctttttaccatttgtttgtgttgtggttgtttCAAACTGTGGTAGTAAATcaactttccttttttaatagcTATGTTatgatgtatttgtatatgttgtttattttatttttgtcaaataGCGTAATATGATCAA

Function

GO: NA

KEGG:

id description
K12333 ADM; adrenomedullin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27417 lncRNA downstream 416794 7324424 ~ 7327742 (-) True AMCG00007201
TU27327 lncRNA downstream 1039874 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 1055427 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 1099658 6638997 ~ 6644878 (-) True G21787
TU27300 lncRNA downstream 1106477 6635583 ~ 6638059 (-) False G21786
TU27647 lncRNA upstream 5969 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 153357 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 166159 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 233903 7981348 ~ 7984510 (-) True G22111
TU27820 lncRNA upstream 504582 8252027 ~ 8252664 (-) True G22191
AMCG00007222 mRNA downstream 15492 7715204 ~ 7729044 (-) True AMCG00007222
AMCG00007215 mRNA downstream 104632 7632618 ~ 7639904 (-) True AMCG00007215
AMCG00007212 mRNA downstream 114360 7615156 ~ 7630176 (-) True AMCG00007212
AMCG00007213 mRNA downstream 130124 7606583 ~ 7614412 (-) True AMCG00007213
AMCG00007214 mRNA downstream 153236 7584786 ~ 7591300 (-) True AMCG00007214
AMCG00007229 mRNA upstream 154728 7902173 ~ 7927369 (-) True AMCG00007229
AMCG00007227 mRNA upstream 181061 7928506 ~ 7934299 (-) True AMCG00007227
AMCG00007228 mRNA upstream 188817 7936262 ~ 7946941 (-) True AMCG00007228
AMCG00007226 mRNA upstream 200269 7947714 ~ 7971575 (-) True AMCG00007226
AMCG00007238 mRNA upstream 356043 8103488 ~ 8104939 (-) True AMCG00007238
TU27501 other downstream 237661 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 1730367 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1924252 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2687130 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2695016 5042520 ~ 5049520 (-) False G21426
TU27830 other upstream 645751 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2439869 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 5604072 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6198198 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 8573552 16320997 ~ 16322651 (-) False AMCG00007365

Expression Profile