RNA id: AMCG00007222


Basic Information

Item Value
RNA id AMCG00007222
length 2184
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00007222
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7715204 ~ 7729044 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACTGACCACTCCTGAAGACATGCCCAGGCAGTTCCCCAAGCTCTCGCTGAGCGAGGTGGACGAGAATGTACGCCGGCTGGCGGAGAAGGTTTACGCCTCGGCGATACGGGAGGAGGACACCAAGGATGCCCTGTCCCTGTTCACCGTGGCCGAGGACTGTCCCATCGGAGTGCAGGAGGCCAAGGAGCGAGAGCTGCAGAGGGAGATGGCTGAGCTGCACTCGGAGGAGACGGCCAAGAGgaAGAAAAGTTTTAAGTTGATCCGCTCCCAGTCCATGTCCTTACAGATTCCAGTCAATCCAGACTGGGCCATGTCAGTCATCTCCCCTATCCTCTCACCAGCCTCTACCTCGGCCTCCATACCCGATAATGCCCCTGAATACCAGAGGGTGACCATCAGTGGAGACCACTGCGCTGGGATCACTGTTGAAGACTATGAACAGGCTGCCAAAAGCCTTCTGAAAGCTCTGTATATTCGAGAGAAATACTCAAAGCTGGCCTACCACCGCTTTCCCCGGACAACAGCCCAGTACTTGCGGGGAGCTGAAAACGAAAAGTGGAGTGAGGAAGAAGAGGTTCTGCCAGACATTATTCCCTGCCCACGAAATGGAGAGGATCCTTACAGTATGAAGGACATACCCGAAAACCTGAATTATGAACTGCAGATGAAGGATGGGATCATAAACGTGTATGACAATGCTGAGGCGATGAGACTGCACCAGCCCCGGAGCCTCCCTTACCCGGACCTGGAGACGTTCGCCATTGATCTCAGCCACGTCCTGGCCATGATTGCTGATGGGCCTACTAAAACCTACTGCCACAGACGGCTGAACTTCCTGGCATCTAAATTCAACCTGCATGAAATGCTGAACGAAATGGCCGAGCTGAAAGAACTGAAGAGCGTCTCTCACAGAGACTTCTACAATGTCAGGAAGGTAGATACCCACATTCACGCTGCAGCCTGCATGAACCAGAAGCACTTGCTGAAGTTCATACAGAGCACATACAAGAATGAATCGGACAGGGTCGTGGTGGAGAAGGGGGGAAGGAAGATGACCTTGAAGGAGGTGTTTGACGAAATTCACATGGACCCCTATGACCTGACTGTGGACTCCCTGGATGTTCACGCAGGGAGACAAACTTTTCATCGCTTTGACAAATTTAATTCCAAATACAACCCAGTTGGTGCCAGTGAGCTCAGAGAAATCTACCTGAAAACGGACAACTACATCAATGGGGAATATTTTGCCCGTCTCGTCAAGGAAGTTGCTCATGAGTTGGAGGAGAGTAAATACCAGCATGCAGAACCTCGCCTGTCTATCTATGGGAGATCCCAGGATGAGTGGCATAATCTGGCAAAGTGGTTCATCAAGCAAAAAGTGTATTCCCCCAACATGCGCTGGATCATCCAGGTCCCTCGGATATAtgacatttttaaaagcagaaacattGTACAGAACTTCGCGAAAATGTTGGAGAACATTTTCCTTCCACTCTTTGAGGCGACAGTTAATCCACAAAAGCATAAGGATCTGCACCTCTTCTTGAAATACGTGACTGGTTTTGACAGTGTGGATGACGAATCCAAGCACAGTGACCACATGGAGAGAGGACTCAATACCTTCATGTTTCGGCCACACTGTGGGGAGGCCGGCTCCATCACTCACCTGGTGTCTGCCTTCCTGACGGCAGACAACATCTCCCACGGTCTGAACCTCAAGAAGAGCCCAGTCCTCCAGTATCTCTACTACCTGGCCCAGATCCCGATTGCCATGTCACCCCTGAGCAATAACAGCCTGTTCCTGGAGTACTCCAAGAATCCATTACGCGAATTCCTGCACAAAGGgctctgtgtctccctctccaCCGACGACCCCTTGCAGTTCCACTACACCAAGGAAGCCCTGATGGAAGAGTATGCCATCGCAGCGCAGCTGTGGAAACTCAGCACCTGTGACGTCTGTGAAATCGCCAGGAACAGCGTATTGCAGAGCGGGCTGTCTCACCAGgaaaagaaacatttcataGGGGCGAACTACTTGAAGGAAGGTCCAGAAGGCAACGACATTCGGAGAACCAACGTCGCACAGATACGCATGGCCTACAGATATGAGACCCTGTGTAACGAACTCAGCTTTCTGGTAGATGCTGTCAAATCAGAGGCCATAGTATCACAGGCA

Function

GO: NA

KEGG:

id description
K01490 AMPD; AMP deaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27417 lncRNA downstream 387462 7324424 ~ 7327742 (-) True AMCG00007201
TU27327 lncRNA downstream 1010542 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 1026095 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 1070326 6638997 ~ 6644878 (-) True G21787
TU27300 lncRNA downstream 1077145 6635583 ~ 6638059 (-) False G21786
TU27647 lncRNA upstream 24370 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 171758 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 184560 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 252304 7981348 ~ 7984510 (-) True G22111
TU27820 lncRNA upstream 522983 8252027 ~ 8252664 (-) True G22191
AMCG00007215 mRNA downstream 75300 7632618 ~ 7639904 (-) True AMCG00007215
AMCG00007212 mRNA downstream 85028 7615156 ~ 7630176 (-) True AMCG00007212
AMCG00007213 mRNA downstream 100792 7606583 ~ 7614412 (-) True AMCG00007213
AMCG00007214 mRNA downstream 123904 7584786 ~ 7591300 (-) True AMCG00007214
AMCG00007210 mRNA downstream 134308 7573302 ~ 7580896 (-) True AMCG00007210
AMCG00007221 mRNA upstream 15492 7744536 ~ 7747445 (-) True AMCG00007221
AMCG00007229 mRNA upstream 173129 7902173 ~ 7927369 (-) True AMCG00007229
AMCG00007227 mRNA upstream 199462 7928506 ~ 7934299 (-) True AMCG00007227
AMCG00007228 mRNA upstream 207218 7936262 ~ 7946941 (-) True AMCG00007228
AMCG00007226 mRNA upstream 218670 7947714 ~ 7971575 (-) True AMCG00007226
TU27501 other downstream 208329 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 1701035 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1894920 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2657798 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2665684 5042520 ~ 5049520 (-) False G21426
TU27830 other upstream 664152 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2458270 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 5622473 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6216599 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 8591953 16320997 ~ 16322651 (-) False AMCG00007365

Expression Profile