RNA id: AMCG00007227


Basic Information

Item Value
RNA id AMCG00007227
length 3241
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00007227
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7928506 ~ 7934299 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGATTTCAAACCCGCAGCTCGAGTTCTGATTGGCCGAGCGCTCAGTCATTTGACCAACGGTCGCGGGAAGCCGCGGAGTGGGCAGCGGTGGAGattcaaattaattcagtaaaCAAACGCGCACACGGGAGACGCGGAGAGCAGCGGCCCGACCTGCGACACACCACCGTCCTCGGCAAAACGGCTTCGGCGGGCATCTGTCACCGCGGATGAGTGCGGGGAGGATGGACATCGCAGCGCTGCCGTAGGGGAGTATCAGTGCAGCCATTTTCGTTTGCGGGTCTGGACTGCCGTAGTCTGCGCGCACGGAGCTGCCAGGCCTACACAAGGCGGATGGTAAACACCCGACCTGGGCTTAACTCTGCCGGGACTGACGCGGTTTGACGCTAAAGGGCGACACCTGGGATGAGGTTTGTTCACGACCGCAACTTCagcaaagttttattttaaacgtGGAGAAACTTCTCTGGTTCTTTAAAAACATCGACGGCTCCGAAAACAGCCCGTCTTGGACATCATTGATACCGTTTGCTTGGGCTGTATGGTCGGCTCTGCGAATAACGTCGCCTTTTAATACGAAACCGCCTGAATAGCCGACGCTGCCCGTGGTGGAGATGAGTTTCGGTGCTCGACGGGTGGGCGGCGCTTCTCCAAAGATGGGCCCCATCCGCCAGAAGCTGCACTTCTCCCCCAGCGACGGGGAGGACGACCCCGTGGAGGAGGACGGCAACAGCACCGGGGCCGACTCCGCTTTCCAGGAGATGGACTCGCCGGTGCCGAGCAGGCAGAAATCAGCCGAGCAGCGGCACGACGACGACCGGGGCACCCCCCCCAACAGACCGGGCGAGGAGGAGGACGGGGACTACTGGGACGAAGAGGGCTTCGGGTCCCCGTCCCCTCTGAAGTCCCCCGGTGAGCTGATGAGGGGGTCCCCGTCTCCGCGGAAGAGCGCCTCGGCGTACAGCAGCTCTTCCCCGCAGAGGTCGTACGCTCGGTCGGAGAGAGAGGGGTCGAGCTCTCCCATCCCGGACTGCCCCGACACCCCTCCCCACAAGACCTTCAGAAACCTGCGGCTGTTTGATACGCCTCACACCCCCAAGAGCTTGCTGTCCAAAGCCCGGACGCTGGGCTCGGGGTCGGCCCGGCGCAGGGTGGCTCTCTTCAGGAACCTGGACTCCTCTGTGAAAACCAGCTCTGACTGCAAGAGTAACCCAACCCCCCACATCAACATCAACCCCTTCACCCCGGACTCCCTGCTCATCCAATCGGCCGCCCTGCAGAGGAACAATAGGAAGAGGTCCCACTGGAATGAttcttgtGGGGAGGAAATGGAAGCAAGTGATGGTGAATTTGAAGACGAAATCATTCCTCCATCAAAGAGGATAACTATAACTGAAAGCAACATGAAATCCAGATACGCAACAGAGTTTCATGAACTGGAGAAGATTGGCTCCGGAGAGTTCGGCTCTGTGTTCAAGTGTGTGAAAAGACTCGATGGCTGCATCTACGCCATTAAACGCTCCAAAAAGCCACTGGCGGGTTCGGTCGATGAGCAGAATGCTCTTCGAGAGGTCTATGCACATGCGGTGCTTGGACAGCATCCCCACGTGGTCAGGTACTACTCAGCCTGGGCAGAGGACGACCACATGTTGATACAGAATGAATACTGTAACGGAGGCAGCTTGTCCGATGTCATAGCAGAGAACTATAGAAACATGCGCTATTTAACCGAACTGGAACTGAAGGACCTACTTCTGCAAGTGACCCGGGGTTTGAAATACATCCATTCTACGTCGCTGGTACATATGGACATTAAACCCAGTAACATCTTCATATCCAGGAAAACCGTTCCGTGTGTGGATGaatgtgatgatgatgatggctTAAGCACCAGTGTTGTCTACAAAATAGGGGATCTTGGTCATGTGACGAGAGTAAGCAATCCACAGGTGGAGGAGGGAGACAGCCGATTCCTGGCCAATGAGGTTCTGCAGGAGGACTATAAAAATCTAACCAAGGCCGATGTTTTTGCCCTGGCACTGACTATAGTGAGTGCTGCTGGAGCAGAGCCAATGCCTTCTAATGGTGATAAGTGGCATGAAATTCGGCAAGGAAAACTGCCCAGGATACCGCAGGTGCTCTCCCTGGAGTTCCTTGATTTACTGAAGTTGATGATCCATCCAGACCCGGAGCGAAGACCCTCCGCCTCGGCCCTGATCAAGCATCCTGTCCTGCTCACGGCTGCCAGGATGAGTGCAGACCAGCTCAGAGTAGAGCTCAACGCCGAAAAGTTCAAAAATGCGCTGTTGCAGAAAGAGCTCAAGAAGGCACAGATGGCCAAAGCAGCTGCAGAAGAGAGAGTGCTGTTCACAGACCGAGTGATGACGAGGTCGACGGCGCAGTCGAGCAGCAGGACGTCGCGGCTCATTGGGAAGAAGATGAATCGTTCGGTCAGCCTCACGATTTACTGAAATGGACAGATCCACGAGAGAGGAATGTTTGTGCTGGACCAGCGGCCTGTAGTGCCTTCGGTGGAAGGCAGAGTACATTTGACGAAAAACCACAAACTGCTGTACAATACTCATTCTGATGAGGTTTTGGTAGTGCTTACTCTTGGGTACATGTCATTCGCAGATTATCTAAGCCTTGACACTGTCTTGAAGTGTAGGAATGGTTTAATTCCCAACATTTGTCGGTGctccttttagtttttttaattagcattttgctatttaaatgtactggaggtatttttttttattttatatctgaggttattggaaaaaaataactagaTATTTGCACCTTACAGCCTGTGAAAATACCTGATCTCGGGTAAGAACTGGGTCATCAGCTATATGAAagatttaatatgaaaatgagcACTTTGTAGGCAAAGAGGAAGCcatggatgttttttgttttttggatctGTGGTGAACCTGCCCGATGAAAACTGCTGCtattagtgtttttgttgtctgtATCTGTAGcattaaaacaatcatttcCAGGATCCTAGGCTTTCTTTATGTAAATAACGCAACTGTCTGGTTTTACCTGCTACAATGCAGGACTTTTAGTTTTGTACTTCTACTTAAGTTGGGGGGTAAAACTTGTAGTTTTGTAGGTTAGAACTTGCTCGGTGTATCATATTCTCGTTTTAGTACATGTTCTTCTGTTCAgctttgtaaatgtactgtccttaaaccaataaatacaaagcTTTTCCAAATCC

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0009416 response to light stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K06632 WEE1; wee1-like protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27672 lncRNA downstream 27331 7900802 ~ 7901175 (-) True G22077
TU27647 lncRNA downstream 174809 7753414 ~ 7753697 (-) True G22057
TU27417 lncRNA downstream 600764 7324424 ~ 7327742 (-) True AMCG00007201
TU27327 lncRNA downstream 1223844 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 1239397 6687484 ~ 6689109 (-) True G21803
TU27713 lncRNA upstream 47049 7981348 ~ 7984510 (-) True G22111
TU27820 lncRNA upstream 317728 8252027 ~ 8252664 (-) True G22191
TU27822 lncRNA upstream 319594 8253893 ~ 8254667 (-) True G22193
TU27848 lncRNA upstream 505553 8439852 ~ 8443144 (-) True G22217
TU27884 lncRNA upstream 755899 8690198 ~ 8690751 (-) True G22249
AMCG00007229 mRNA downstream 1137 7902173 ~ 7927369 (-) True AMCG00007229
AMCG00007221 mRNA downstream 181061 7744536 ~ 7747445 (-) True AMCG00007221
AMCG00007222 mRNA downstream 199462 7715204 ~ 7729044 (-) True AMCG00007222
AMCG00007215 mRNA downstream 288602 7632618 ~ 7639904 (-) True AMCG00007215
AMCG00007212 mRNA downstream 298330 7615156 ~ 7630176 (-) True AMCG00007212
AMCG00007228 mRNA upstream 1963 7936262 ~ 7946941 (-) True AMCG00007228
AMCG00007226 mRNA upstream 13415 7947714 ~ 7971575 (-) True AMCG00007226
AMCG00007238 mRNA upstream 169189 8103488 ~ 8104939 (-) True AMCG00007238
AMCG00007239 mRNA upstream 246259 8180558 ~ 8183186 (-) True AMCG00007239
AMCG00007240 mRNA upstream 509028 8443327 ~ 8466794 (-) True AMCG00007240
TU27501 other downstream 421631 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 1914337 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 2108222 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2871100 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2878986 5042520 ~ 5049520 (-) False G21426
TU27830 other upstream 458897 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2253015 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 5417218 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6011344 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 8386698 16320997 ~ 16322651 (-) False AMCG00007365

Expression Profile