RNA id: AMCG00007240


Basic Information

Item Value
RNA id AMCG00007240
length 2505
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00007240
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8443327 ~ 8466794 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAATCAGGGTAGAGCAAGCATCCTTTGTAACCCAGTGTTTTGCCTTTTAAAGAACCATgcagtatacattttattattttcctgtgaAGGCTGGTTGTGGATTAACATAGACCTTCTGCTGTTTTCCCATAGTGTTCTGGATGACGAGAGCAGCAACCTTCGGCAACAGAAGCTAGACAGACAGCGTGCTCTGCTAgagcagaagcagaagaagaagcgCCAGGAGCCGCTGATGGTGCAGTCCAACGTGGATGGCCGCTCGCGCACGCGCAGGATGAAGCAATCTGAGGAGCAGGCCCCGCTGGTGGAGTCCTACctcagcagcaacagcagcaccaTCTACCATGGAATCGATGGTCCAGCTGCCTTTCAGGACGAGGTGCAGGACCTGGGGAGTCAGATCCAGATCCTTACGGTGGGGCAGTCCAGTACAGATGAGGGGGAAGGAGACCCTGTGACCAGTGCCCAGCAGCAGGGAAAACAGGACCTGCGAGTCACCATGCAGAAGAAAGgcatTTCCAGTAGTATGAACTTtgatgaagaggaggatgaggaggatgAAGACAGTTCCAACTCCTCTCAGCTTAATAGCAACACTAGGCCAGGCTCAGCCAGCAGCAAGAAATCCAGCAAGGAAGCTGCATCAGCCTCCACCCCACCAATGAACGAGCCCATGGTAGATGTTGATGACCTGGAGGAATTTTCCTTGAGACCCGCCCCCCAGGGCATCACCATTAAATGCCGGATCACACGAGACAAGAAGGGCATGGACAGAGGAATGTACCCCACTTACTACCTCCACCTGGAAAGGGAGGACGGCAAGAAGgtCTTTCTGTTAGCTGGAAGGAAACGAAAGAAGAGCAAAACCTCAAATTACCTCATCTCCATAGACCCAACTGACTTGTCTCGTGGTGGAGAGAGTTTCATAGGGAAACTCAGatcAAACTTAATGGGGACCAAGTTTACAGTTTATGACAATGGTGTGAATCCCATGAAGACCACCTCCAGTTTAGAAGCAAGCAACCTCCGTCAGGAATTGGCAGCTATCTGCTATgaAACTAATGTTTTAGGTTTTAAAGGCCCTCGGAAAATGAGCGTGATCATCCCAGGAATGAACATGGATCACGAGAGAGTCTCCATCAGGCCGCGGAACGACCACGAGTCTCTGCTGGCGAGATGGCAGAACAAGAACACGGAGAGTGTGATTGAGCTCCACAACAAAACGCCCGTCTGGAATGATGACACGCAGTCCTACGTCCTCAATTTCCACGGCAGAGTCACACAAGCCTCAGTGAAGAATTTCCAGATCATCCACGACAACGATCCGGACTACATAGTAATGCAGTTCGGTCGAGTGGCTGAGGATGTTTTCACAATGGACTACAATTACCCAATGTGTGCACTTCAGGCTTTCGCTATTGCGCTGTCCAGCTTCGACAGCAAACTGGCCTGTGAGTAGGGGCTCCGCGCGCGCAGTGTTCCTTTCCACGTTTTCTGTGGACCAAGCTGGCACCACTGACACCGCCCGAGACTCTGTAGACGTTTGGTTTCCCGAATCAAAAGCTGCAGAGACTTGGAAGGTGATGACATCTGAGAAACTCCATGGTTTCAAAGCAGTGGGATTTTCACTTGCAGAATGTGCAATGTGGTGGCTGTTGATTTTGACCGCTGTTTCAGACACGGGAAAAGATATCCCTGTGGGAAGTGTTGATAAGCACAAATAGTAACTCACTGTTGCATTGgaagcgtttttttttttatatataaattataagtAGTTTtaaggtttagtttttttattttattgaactttttatccacaaaggaaaaataaaagttcttAAGATATTGGAAATCTAATATATGTCTGTAATAAGGAGAGGCCAGATTTGTTTAAGGTTGCATATCAACTCCCTCACACTTATGTACTGTTAATGAAATCCAGTGGTTATTTACTCTTCCCCCGAACCTTACTTTGGCTAACAAGGTTTACATTCTCTTCTGTTGGAATAATAGGATGTGTGGTATTACCATGTATATGTGTCAAACATTTGGCCAATACCCATCTTCCATacgatatatttatatatgtatatgtgtgtgtatgtgtatatatacactctctatcacacacacattaaatattcactaatacagatttttgtattaatttaagatAAAGTGCCATCTATATCAGTGGATACACACTACATATTATAATCAATGTGAATATGAAGGGACTGCAGATTGTTGAATTCCTTGCTGTGATGATATTGCATTGCTGTTGACTGAAATACATGTAATGGCCAAAAGTGAATGCTTTAAGTTGTCTGTAATTATGATCAAACCAAAAAGAGTTCTCTCTCAATGTAGTACACCCtaaattaactgtttttttaatgtaagaatattatatatcagcatcaccatcagcccatatcgatcccctgctgaatgaaggcctccccgATCAACAGCtcctcttttccatgtcacgcttgcaa

Function

GO: NA

KEGG:

id description
K19600 TUB, TULP; tubby and related proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27848 lncRNA downstream 183 8439852 ~ 8443144 (-) True G22217
TU27822 lncRNA downstream 188660 8253893 ~ 8254667 (-) True G22193
TU27820 lncRNA downstream 190663 8252027 ~ 8252664 (-) True G22191
TU27714 lncRNA downstream 458817 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA downstream 458817 7981348 ~ 7984510 (-) True G22111
TU27884 lncRNA upstream 223404 8690198 ~ 8690751 (-) True G22249
TU27939 lncRNA upstream 509323 8976117 ~ 8980074 (-) False G22298
TU27941 lncRNA upstream 509323 8976117 ~ 8980818 (-) True G22298
TU27949 lncRNA upstream 714224 9181018 ~ 9184829 (-) True G22305
TU28070 lncRNA upstream 950974 9417768 ~ 9437269 (-) True G22393
AMCG00007239 mRNA downstream 260141 8180558 ~ 8183186 (-) True AMCG00007239
AMCG00007238 mRNA downstream 338388 8103488 ~ 8104939 (-) True AMCG00007238
AMCG00007226 mRNA downstream 471752 7947714 ~ 7971575 (-) True AMCG00007226
AMCG00007228 mRNA downstream 496386 7936262 ~ 7946941 (-) True AMCG00007228
AMCG00007227 mRNA downstream 509028 7928506 ~ 7934299 (-) True AMCG00007227
AMCG00007246 mRNA upstream 85303 8552097 ~ 8560440 (-) True AMCG00007246
AMCG00007247 mRNA upstream 136684 8603478 ~ 8617299 (-) True AMCG00007247
AMCG00007248 mRNA upstream 153744 8620538 ~ 8626345 (-) True AMCG00007248
AMCG00007249 mRNA upstream 228667 8695461 ~ 8698149 (-) True AMCG00007249
AMCG00007255 mRNA upstream 514776 8981570 ~ 9011201 (-) True AMCG00007255
TU27830 other downstream 47103 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 936452 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 2429158 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 2623043 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 3385921 5056787 ~ 5057406 (-) True G21429
TU28289 other upstream 1720520 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 4884723 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 5478849 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 7854203 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 7854243 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066059 False 769 mRNA 0.52 6 NC_007118.7 27898208 ~ 28035074 (+)
grasscarp (Ctenopharyngodon idella) CI01000068_00161849_00169705.mRNA True 1594 mRNA 0.56 10 CI01000068 161849 ~ 169829 (+)