RNA id: AMCG00007242



Basic Information


Item Value
RNA id AMCG00007242
length 1158
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00007242
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8431102 ~ 8451582 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCGCTATCTACATTTCAGAAAGTTACTCTGGTCTCCTGCTTCGTCCTCTGTATATCTCTGCTGCTTCCCAAAATACTTTTATCCAGATCGAAAAAGGAAGTAGGGCAGCCGGAGGGGCAAGGACGGTTTTCTCCCATGATGCACCGTCAGAAGACATCCGAAAGCCAATCACAGTGGGTGTCTGGGTCACACTTCCCCAAAGCTCCCCACACAGAGCCTATAGCCAAGGCCAAGGGCAACGGAGCTGGAGGGAGTGGTGGGGGGAGATCCAGCTTCATGGGGCAGATCATTCCTATCTATGGCTTTGGAATCTTCTTGTACATCTTATACATTCTCTTTAAGATTACATCTAAGGGCAAAAACACTCAACCTGATCATAGATTCCCCGccttgaaaacagaaaatatgaaaaggaaaatcaCTGATTTTGAGCTGGCTCAGCTGCAGGAGAAACTGAAGGAGACCGAAGAAGTGATGGAGAGGATTGTGTCCAAAGTTGGGCACAATCCTGAAGGGATTAAAAGTGTCACCAGCGAGCATGAAGAAAAATTACTCCATCAGCTGAAAGAAATTACCCGGGTGATGCAGGAAGGCAGGCTTATAGAGGGAATCTCCCCAGAGGAGGAAGCGGAAGACGTGCCATACAATGAGGACTGGGAAGGCTATCCAGAGGAGACCTACCCAATCTATGAGGAGCCGGCCAGCAGGAGGCAGACGTACGACACCATCGTGCTGGACCGGCTGGACACCGACTGCCCGACACCAGAAGAGGTGGCCGAGAGGATGGGGGACACGGAGGACCTGGAATCCGAGGAGTGctactccctgggccccctggGGGAGAACGACatggagaggaaaggagaggagCACAGGGGCAAGCAGACAACCTTCTGTGAACCACGAGACATGTTCCAGTACCAGGAGGATGACGAAGAGGAGGGAgctgggggggaggaggaggaggaggaggaggaagaggacccTGCAGTCGTCGCTGAGAATCTCGGCTTCAGTTGTGAGCACTTCAGCGATCCGGAGGACGAGGGCGAGGACTCCTGCCAGATAGCTGGCACTGCGGTGGGGAGCAGAGAGGCTGGAATCGCAGACGAGCCGGCATTCGGTGTCCTCAGAAAACGCAATAAGTGGAGGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU27821 lncRNA upstream 176534 8253893 ~ 8254655 (+) True G22192
TU27779 lncRNA upstream 247768 8180672 ~ 8183421 (+) False AMCG00007232
TU27842 lncRNA downstream 32985 8484262 ~ 8484504 (+) True G22211
TU27843 lncRNA downstream 40884 8492161 ~ 8492457 (+) True G22212
TU27862 lncRNA downstream 140862 8592139 ~ 8604058 (+) True G22230
TU27922 lncRNA downstream 524824 8976101 ~ 8978196 (+) True G22285
TU28004 lncRNA downstream 884441 9335718 ~ 9339100 (+) True G22344
AMCG00007243 mRNA upstream 35320 8386070 ~ 8395869 (+) False AMCG00007243
AMCG00007241 mRNA upstream 179370 8242184 ~ 8251819 (+) True AMCG00007241
AMCG00007245 mRNA upstream 209553 8217578 ~ 8221636 (+) True AMCG00007245
AMCG00007244 mRNA upstream 226068 8187419 ~ 8205121 (+) True AMCG00007244
AMCG00007232 mRNA upstream 249609 8147398 ~ 8181580 (+) True AMCG00007232
AMCG00007252 mRNA downstream 221212 8672489 ~ 8687381 (+) True AMCG00007252
AMCG00007253 mRNA downstream 246706 8697983 ~ 8710500 (+) False AMCG00007253
AMCG00007250 mRNA downstream 299890 8751167 ~ 8762076 (+) True AMCG00007250
AMCG00007251 mRNA downstream 326692 8777969 ~ 8784734 (+) True AMCG00007251
AMCG00007254 mRNA downstream 429607 8880884 ~ 8957404 (+) True AMCG00007254
TU27825 other upstream 34947 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 1052243 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 2850895 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 2861110 5565941 ~ 5570079 (+) False AMCG00007148
TU26962 other upstream 2861110 5565941 ~ 5570079 (+) False AMCG00007148
TU27900 other downstream 253380 8704657 ~ 8711311 (+) True AMCG00007253
TU28037 other downstream 985247 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 2159919 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 6027396 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 6835220 15286497 ~ 15287960 (+) False AMCG00007352

Expression Profile


AMCG00007242 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

AMCG00007242 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00007242 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.