RNA id: AMCG00007244


Basic Information

Item Value
RNA id AMCG00007244
length 5482
RNA type mRNA
GC content 0.45
exon number 19
gene id AMCG00007244
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8187419 ~ 8205121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGGTGATGATCAGACTTCACTATCTGTCCTTCTCTACAATCAGAGCTGCACTACTGGACATGCACTGGATGAGATTTTAAAAGACTTTCTGGTTCAAAACGTCAACATGGAAAAGCATTGCTCGTACTGTGAAGAGCAGAGGCCAGCGCAGAGCCTGTGCACGTTCTGCAATAAGTGGCTGTGCTTTCAATGCACCGACATACACCGGCATCAGAACAATTGCATTGCCCTCTTGAAGTCTGAGGGAGAGAAGTTGCTGCCTCATACTGGTGCGAAAGGATTCCTGCTCTGTCATTTTCATCATCAGGAGCcactggatttgttttgtgaaacatGTGACAGGCTTTCCTGTAATAGCTGCCACCTCTTAGTACACAAGGATCACAGaTTAATTCATGTTGAGAAAGCACTTCAAAATCAACAGTGGCTTTTTGAGAACTTAATGGCACAAGTGGAGGACAAGAAATCATTTGTGGAGACCTCTGCGAAACAAATAGAAGCCAGGTTACATGATATAAAGCTAATGCAGAGGAAGGCTGAAAACcagattaaaatgtcaaaaatgaTTATGATTAATGAACTGAACAAGCGAGCCAACCTATTAATAGAACAACTTGAGAAGATAGCtaatgatttcaaacaaaagcTGGACAGTCAGCTTCATGGGATGATGGATCTTTGTAGCCAGCTGGGCCATGTACAGAACTTTATAAACTGGGCGAACACAAACCACAGCAGGAATCCCCTGCTCTTCAGCAAGGAACTGATCACGTTCCAGATGCAGCGCCTGCTTGAAGCACAGCTGCACTTCGATGTGGGCGCTGGCATGAAGATAAAATTCAACTGGGATGCCAGTTTCTGGACCAAGCAGATTTCCAGTTTAGGACAACTGACAACAGAAGGAGTAGGCCCTCCTCATCCTGAGAGCGTTTCCTGCCCAGATATTCTGAAACCTCAGCCAATCGCATACACAACTCTGCCTGCCTCCATTTGCCACAGGCCTTTAGGACAGGGCTGCAGATTCCAGACTTGTTTTCAATCGCAGATGTGTTGTCCACACTGCCTGGATGTCTCTCCTATGCCCAAACAATGTGCAGACCTACACCACGGGCTCATTGGACAGAGCAGGCCGCCCCCCACTACACAGCTCCTGAGTGCCTCTGGGCAGGGCAGGAGAGTCCGCCCCATCAGGCCCTTCCCCGCAAAGATCTGGCACCACAACCAGCCGCCACCCGAACCAGCACAGCAGGCCTCCTGGTGGCAGGGAGCGCATGTGGACAGGGAGCAGCTGGAACACACGCCATACCCGGCCAGCTGCATGCTTCAGAACCAGACCAGTGCCACGGTGCTGCCAAGACCCTCCTCATTGCAGCTGCAAGGCTGCTGGGAATCGCACAggcctccagctcctgcagctcaGGTGACGCAGCAGCCGTTTCTGCAGCACCCCCCCCTGCAACAGCCCCCCCTGCCCGCAGACAACCCCCCGCAGCCAGACTGTACAGTGCAACTGGAAGTGGAGCACCTGGTGCACTCGCAGGAGCCCCAGCCAGCGCTCTGTCCAGACAGGCAGGCCGAGCAAACCCGGGCAGGGCAGGCCAGTGCGAGGCAGCAGCAGGCCTGTGTGCAGAAGCTCAGCACGACCCCAGCAGCGGATAATGGTCAGGAACCCCAGGCGCAGAGCCGGCCACCGGAAACAGCCCTGCAGCTGCAGAGCAGGACCAGCAGCAGGATGAGTCATTCACATGTGGTAGACCAGAACATTAGCACATCTCTGACTGTTACCTCGAATCAGTGCATTTCTCAGCTATCCTCGGACAAGTGGATACACATTAAAGGCTTTAAATACTTAGTCTTAGACAGATTTCAACCACAGAAACTGCTACTGGATTCCTCAGGGACATATCGTAGTAATTATGTGGAAACTGTTGGTGTCGGCTGGCCTAAATCTCACAGCGACTCGGTGCAGAGATGTGGAAAGAGGGAAGCAGGATCTGCATCGGTGGGTGCTGCTTCCATTGCTCCTGCCTTGTTGAAGATGTCTGAGCCAGCCGGCAGAGCACCAAAGACACCCGCCACGATGTGTCGGAAGAGGACTCGTCCCAGAGACGCCCAGGCAGATGCAGCAGTGCCTCTCTCCGGCCCTGGAGTGCATTTGCCCTCTGAAGACCTGTCCCCGGGGGCCAATCACAGCTTAGCAACGAAACACAGGGAGCCAGGCAGCAAGGAATGCAAGGTATTGAAAGCACTTGTCCAGAGCTGTGAAGGCAATGCAATAGCAGACAGGGTTTCTTTGGAGCAGCCCATTAACCTGTCGGTCAACAGAGTTCTTATTTGCCCCGCAGTCTTGCGGCTCTCCCGTTTGACGGCCCTGAAGACAGAGCCAGATCGTAGAATATATGTAGGAGAAGATACTGAAAGTAAACAAATGGCTGGAAACTCTTCACAGATTACTGTCAGAACGCCAGGGGACATGTCAAAGTTCCCAGTGAGTTCAAAGGTTCCATTTGTGCGTCTGGAGCGCCTGAAGCTTTGCCCGGTGCTGGGCCAGCTGCCTGGGATCAGACTGCCCATAGACAGCGAGGAAAGCCAGGACCCCCCAGCAGACCACCCTGAGCTGAACACCGACCTGTCAGAGGCACCCCCGCAGGTCTACCACCTCTCCTGCCACATCCCGCCCCTCCTCAGCTTCCCTGTGGGTGACTGGCTTTGCACGCTCTGCTGTGACCTCCAGGAGCCAGAGGTGGATTTTGACTGTGAGAATACACGGCTGTCTGCAGAACATAAGGGGCAAGGCACTCAGTAtgggctgtctgtctgtgaccAGAGGAAATGCGAGAAGCTGACACTGTCCATTTACTGCAACATCCTCAGCGGCCCATTCCATGAACCGGTCAGCCCACTGGCCCGTCACTACTACCAGATAATCAAGAAGCCAATGGACCTGTCTGTTATAAAGAGCAAGCTGAATAAGAGGAACCCCCTCCATTACTACACACCTGAGGAGTTTGTGGCGGATGTCTTTCTTATGTTTAGGAACTGTGCAAAGTTTAATTACCCAGATTCAGAGGTGGCCCAAGCAGGAAGGAGTCTGGAGGTGTTCTTCAATGCGAAGCTGACAGAGGTTTTTCCGGACAAAATCTTTCCGGACCTGGTGGACGACTCGGACTCGGAGGAGTTTGATGAGGTTTACAAAATGGGCGTCAATGGCTTCCCTTGGCCAGCAGATGACAAGGATCACTTCCACAGGAAGAGGAAACGAAGACACTCTCTGAACTGGAGGAGGCACCATTTTTAATGGCTTCCGAACTGTCCTTAAAAACACCATCAAAccttattgaaatataaataatcttttTGTCATATTGCTCTGGAGATGTGACCCATGATTGGTTTCTACAATATATATGACTTTCACAGATTTTATCGAGGAAGGGGACATTTCCTTTGCTTTCATATATAATCATTTGTCTATTTCTTCCTTAAAAAGGGATACACAAAGGTGAACAATTTTTTTCcatacattgaaatataatgcaattcAAGTCTGATCACTTACAATTCACCCTGTTACTAATGACAGAGAAAagtctgaatgtgtttttttgttagtcttttttaatcttgtaAACTAGCACGTGTATTTACTAGTAATTCTACATAATTTAGCTAAAGTGTTTATGATTAACTAAATATTTTACTGACATTTCCTGTAAATCTCCACTTCTTgtgtttatacaattattattattatagtgattattattgttattatattgtatCATTGTTGGCACCTAAAGGATGCATGCAACAGCCAAGCTGTTATTAAGAAAGACATTGTAAACAATAAGGATTAACTACTAGATTAAGGTTAAGAAAAAGGACATTTTACTGAACGCCTTTactgaataataagaatacattttttggagTGGATATTTTCTACTATGTACATATTATTTTCACTCAGACTTATGTCTTTTGGTCAATTtgtagaaaatgcttttataaatgttctgtcattttttgttattccagCAGAGGGGGCTCTTACTTCAAATTAAGTGTAAGGTTTGCAAGGTTCAGACTGCATTCAGGCCAATAAAGAGGCCATGAAAATACTCATCTTATACTTTGGTGGGTGTCtaataaaaaagatttaaatacccccctttcacacaaaacaaaaactttcaaCATTTCCTACATTCCAAGGCTTTGAATGGCAACAATGTGTTACTAGGATACACCTATGCATTTTCATCTTTGGGAATGTAATTAGATTATGGAAGGCAAGGCTATGCAGTTTTATGAGACAACTATAATTTAAAGACTCACACTGTTACTATTATGTTGGAGGGCTTTAATGGAAGTGAACAGAATCCTAACTGGTGTGGATGAGGTCGGGTGTTATTTAAGACTTTGGCTTACACACACGGCACTGGAGAGTGTAGACcttgaggaaaaaataaactggaacTAATGCAGAAACTGGCTATTGCCAGTAGAACATGTTATTTATTGGCTATTCTAACGGATGCAACAATGGGGCTCAAGATATTTACAGAAACGCCAAAAGCTAAATATTGACGATGTTGACCTTTTACGATTGGACTCATCAGTATGCTTTTCAGTCTTAAATGTCTCGTATTCCACAATTGCACTTGTTGTATAGTCTACTACAATTCTGAAATCTCAGGGatatgaaattaaagaaaagactGACCTAAACTTAGTGTATTTTGGAATAGGCTatgtttactgttttatttgttgatgGTGGTTTTGAGATAGATTGTTACTTTGTATAGAACTATAACTAGAAAAGGAGTTCTGCCCTTTTATTCCAACACCAGAAACTGTACCGATATATGACCTGTTTCCTTGTCTCCATGTCATCCCTTCAGAAATCTttataaaaacagattaatcTTTCATTTGATGCCTTATTATTACTTGTCCCTGTTTTCACTTAAATGCTCCCCCCCACACAACTCAAGTAATTGTTCAAATGCCAACACTTCTTTTAAACCAAACTTACTTCACAGCATAATTTCTGGCAATCTTCTCATCTCACATCTGAGCATATGcaataaaaaagtgatttttgtatttatttattttttaaatacaacccTGTAATGGGACCAACAGTCTTTCATCCCTGATTTTTAAGCATGACAGAATGTGGTTATGATGTGTAACAGTTCAAATAAGCATAGTGTGTCACTCTGCAGCTCAGCCCAAGTGATTCTCATCACACAGGCTGGTATTTGACTTAAATGATCTTGACAAAAGACAGAGCACTGAAATGCAGCAGGAACTTAAATAGGAGATAGTTTTGCAGTGCAAGACTAAGGTGATAAAGGTTCAGCAGGTGAAGTAGAAAAtatcacataataataataattttcatgtttctgtttgtaaCTCACAGTTATgtatctttctttatttaaatcatttaaattgtcTCCAAG

Function

GO: NA

KEGG:

id description
K12032 TRIM66; tripartite motif-containing protein 66

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU27779 lncRNA upstream 3998 8180672 ~ 8183421 (+) False AMCG00007232
TU27780 lncRNA upstream 3998 8180672 ~ 8183421 (+) False AMCG00007232
TU27781 lncRNA upstream 3998 8180672 ~ 8183421 (+) False AMCG00007232
TU27784 lncRNA upstream 3998 8180672 ~ 8183421 (+) False AMCG00007232
TU27671 lncRNA upstream 286244 7900779 ~ 7901175 (+) True G22076
TU27821 lncRNA downstream 48772 8253893 ~ 8254655 (+) True G22192
TU27834 lncRNA downstream 225981 8431102 ~ 8431862 (+) False AMCG00007242
TU27835 lncRNA downstream 239804 8444925 ~ 8445550 (+) True G22204
TU27839 lncRNA downstream 244963 8450084 ~ 8450494 (+) True G22208
TU27840 lncRNA downstream 245646 8450767 ~ 8450978 (+) True G22209
AMCG00007232 mRNA upstream 5839 8147398 ~ 8181580 (+) True AMCG00007232
AMCG00007231 mRNA upstream 85631 8098065 ~ 8101788 (+) True AMCG00007231
AMCG00007230 mRNA upstream 91237 8092029 ~ 8096182 (+) True AMCG00007230
AMCG00007237 mRNA upstream 99985 8080173 ~ 8087434 (+) True AMCG00007237
AMCG00007236 mRNA upstream 107557 8073768 ~ 8079862 (+) True AMCG00007236
AMCG00007245 mRNA downstream 12457 8217578 ~ 8221636 (+) True AMCG00007245
AMCG00007241 mRNA downstream 37063 8242184 ~ 8251819 (+) True AMCG00007241
AMCG00007243 mRNA downstream 180949 8386070 ~ 8395869 (+) False AMCG00007243
AMCG00007242 mRNA downstream 226068 8431189 ~ 8451277 (+) True AMCG00007242
AMCG00007252 mRNA downstream 467368 8672489 ~ 8687381 (+) True AMCG00007252
TU27445 other upstream 808473 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 2607125 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 2617340 5565941 ~ 5570079 (+) False AMCG00007148
TU26962 other upstream 2617340 5565941 ~ 5570079 (+) False AMCG00007148
TU26956 other upstream 2625265 5558805 ~ 5562154 (+) True AMCG00007147
TU27825 other downstream 162315 8367436 ~ 8396242 (+) True AMCG00007243
TU27900 other downstream 499536 8704657 ~ 8711311 (+) True AMCG00007253
TU28037 other downstream 1231403 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 2406075 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 6273552 14478673 ~ 14489692 (+) True AMCG00007337

Expression Profile

AMCG00007244 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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AMCG00007244 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00007244 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.