RNA id: TU27900


Basic Information

Item Value
RNA id TU27900
length 2638
RNA type TUCP
GC content 0.37
exon number 5
gene id AMCG00007253
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8697983 ~ 8711311 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGATGTGCACCTAAGCTCCATACAACAGAATCAAGAGTTGGTCTACCAGTTGAAAGAAGTCAACTTCACCCGTTTGTTCAGAGAAAGATCCAACACTAAAGGGGACCATGGTTATGTTGAAGATCTCTGCTTTCCTTGTCGCATACGCCTTGGTCATATGTCAGATGTACAGCTCGCAAGCAGCTCCAGCCAGACCTGGGTTAGAGTCAATGACAGATCATGTCACTCTCAGCGACTATGAAGCCCGGAGGTTACTCAATGCTTTAGTAAAAGAGTTTGTGCAAATGACAGCAGAAGAACTGGAGCAACAAGTGAATGATGGAAATAGCGTTACAGCACAGAAACGAGCCTGCAACACAGCTACATGTGTCACTCACCGCCTGGCAGATTTCTTAAGCAGATCAGGAGGCATTGGCAACAGCAACTTCGTACCAACCAACGTGGGCTCCAAGGCGTTTGGAAGACGAAGGAGAAACATTCAGCTGTAAATTTTGAATGACCTTCAGGGATACGAGAATGACACTACTCCACAACGCcgcattacatttcttttggGAAAATGAAACTCATGTCTCCAGACTCTCGTACTTAATAGAAGAATGGCCTACAGACCATAGGATTGACTTCTCATCTTCctgatgttattaatatttattttgcttttggcGAAGAGAAACATAGAGCACCTCTGTTGTGTATATGACAAAGAAAAATCCTGAATtcaaaaatctattaattttTATATGCAAatctatttcaaataaaaacaaaatagcactggttatttatttatcctttgGCATAGAGTACATATGTACAATGTGATCCACGCTACTCAAATTTGTCTCAACAGCGCTCTGCAGAACCTCGGGGAGTACATTAAAATTCTGCCTCAAGGCTTCCCTGTTTATGGCTGTGTCTTGTGCCTTGATGTAAAACACTTTACATAACATGATTGTACAgtatgttaaaagaaaaaagaaaaaataatcgaCAACtcaatattgtaacaattgtgaATTTCAgcaagattaaaatgtattttagatacATTTGGGTTGGgatacttgttttatttagagAAGGATGGCAGTAGAGCTGCAGTGAAGTGTTGTGTGATTGAAGTGACTTGCATTCAGACACGTGGTCTAATTCTCTAGTAAGCATCTTGGTGTCAAATCAAATTGAAGGGTCATTGTGAACTGAAGGAAATGTAACTATTCCCCTCAACTTTTGCAGCTGTGGGTTTATTGCAACACCAATCTGGATAGATCACAGTCCACACAATGACTGTTTCCTGGTGCACCCCTTGAAAAATTGAAATGCCTACAGTAACACTTGGTGCCCTAATCCAAACTGAAAGCAATCTGGAATGATTTTGCTTTGTAGGGGTGCTAGCAGACTAGACTTGAACTCTTTGGCACTATATGACCATTAAAGTTTCTGCACGTCCACAAAGTGCCTCTCTAACTCCATAATTCACTTAGCCTGATTCATTGGTTTAATAACTTTTagcagacaaaacacaaaaatatgagAATGTCAAATGTCCTGGAACTAATGCTAATTTAAAAGCCTTCAACAAAACATTAAGTTATTGGCCCAGATCTTTACTGTTTCTCATTGTCATTGCTAATATACTGTATTGGCTGAGACTGGTGATTAAAATGACTTGTAGTTCGATTCAGACTGGAGCAGATTAATATGTGTATGGCATGCTACAGAATGCAGCAAAAAGctagcaagaaagaaagaaagaaagactgtTCTGTTGTGTGCCAGCCAAATTCTGATACCACATTTGCACTATTacaacttttcattttaaagtgatttcaGGATGAAAAGCATTGTAAAAATGCagctaatttattattattattattattattattattattattattattattattattattattattattacatttcaggtaatttttaaatgatgcaCCAATGCAAGAAAATGATTAGGTTATGGTCAATATATCCCTTAAACACTTTAACTGCGACTTAACTGCGAAGTAGTCATACGGCAAAAACAAGACAGCTAGATATTCTAGTTACAGAAAACCAAAGAACAAAAGATTCCATTAATACACAATATCCCCCTGCCCTGCTTAAGATGATGGAGAGGTGTAATGTTTACAGTGGACAAATATGCAAGCAACTTTACACTGCAGGTTCAGAAACAGTTTGAGTTGTTTTTCGACTtcttacattcatatttgcagATTCAAATACACTCATGGCATACCACAGGGATAATGTGGTCTGGTTGTGCAGTCTGCACCAAGTATAAGTAcctttacaaaagaaaatgtgaaatccTCATGCCCAGACACATTGCAGCATAGTTCCCTGAAGAAACTGACTGAAAGATACCTCTActaatttcagaataaaatgttggaaagaTTTCATTTTATCCAAGTTAGTGATTATTTCAAATCACTTGataaacatatacatgtttTCCTTCATATCTATAGCCTTATCAAAAGGTCAGTTAAATCcactcatatatatacatgctcTCTTTTTCATACACCTTGTCTATGAAGTTGGTATGAAGTAAATTACATTATGAAAAATGGAtgaagcaaaatgaaaatggtatctgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU27862 lncRNA upstream 100599 8592139 ~ 8604058 (+) True G22230
TU27843 lncRNA upstream 212200 8492161 ~ 8492457 (+) True G22212
TU27842 lncRNA upstream 220153 8484262 ~ 8484504 (+) True G22211
TU27841 lncRNA upstream 253075 8451242 ~ 8451582 (+) False AMCG00007242
TU27840 lncRNA upstream 253679 8450767 ~ 8450978 (+) True G22209
TU27922 lncRNA downstream 264790 8976101 ~ 8978196 (+) True G22285
TU28004 lncRNA downstream 624407 9335718 ~ 9339100 (+) True G22344
TU28027 lncRNA downstream 684910 9396221 ~ 9396480 (+) True G22364
TU28040 lncRNA downstream 777401 9488712 ~ 9492667 (+) True G22373
TU28104 lncRNA downstream 931286 9642597 ~ 9644747 (+) True G22417
AMCG00007252 mRNA upstream 17276 8672489 ~ 8687381 (+) True AMCG00007252
AMCG00007242 mRNA upstream 253380 8431189 ~ 8451277 (+) True AMCG00007242
AMCG00007243 mRNA upstream 308788 8386070 ~ 8395869 (+) False AMCG00007243
AMCG00007241 mRNA upstream 452838 8242184 ~ 8251819 (+) True AMCG00007241
AMCG00007245 mRNA upstream 483021 8217578 ~ 8221636 (+) True AMCG00007245
AMCG00007250 mRNA downstream 39856 8751167 ~ 8762076 (+) True AMCG00007250
AMCG00007251 mRNA downstream 66658 8777969 ~ 8784734 (+) True AMCG00007251
AMCG00007254 mRNA downstream 169573 8880884 ~ 8957404 (+) True AMCG00007254
AMCG00007257 mRNA downstream 467592 9178903 ~ 9185848 (+) True AMCG00007257
AMCG00007263 mRNA downstream 685542 9396853 ~ 9410088 (+) True AMCG00007263
TU27825 other upstream 308415 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 1325711 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 3124363 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 3134578 5565941 ~ 5570079 (+) False AMCG00007148
TU26962 other upstream 3134578 5565941 ~ 5570079 (+) False AMCG00007148
TU28037 other downstream 725213 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 1899885 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 5767362 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 6575186 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 9487457 18198768 ~ 18201960 (+) True AMCG00007417

Expression Profile

TU27900 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
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TU27900 Expression in each Bioproject

Bar chart with 4 bars.
TU27900 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067668 False 1065 mRNA 0.45 5 NC_007118.7 27680556 ~ 27686021 (-)
rainbow trout (Oncorhynchus mykiss) TU2514689 True 911 TUCP 0.44 5 NC_050570.1 9444364 ~ 9449653 (+)