RNA id: AMCG00007258


Basic Information

Item Value
RNA id AMCG00007258
length 2457
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00007258
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9331189 ~ 9335174 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCTGCCTAATTTGGTTACACAGTCCCTCCTTGGAAACCACGCCAGCGTAACAGGGTGTTCATTTCCCGTCTGACTTCAGTCACCAGACGAAACTGTTGTTTAACATGGAGACGCTGGTCTGTGGAGGAGAGTTTTAAAACCAGACCCGCGTCGGTTTTCTGTCGCCGCTCTTCCGTCGTGAACATGAAGCTTCTACCGTCTCCGACTATCGCCAGGACCGCCCGGAAAAATCAAGAAGTCGTTCGAAGAGTCGTGAATCGGAAAACAAGTGAATTTTCTGGCTACTTCAACCGCTAAAAATAAAGCCCTGAACATGGACTCCCCCGGCCAGACGTGGGGCAGGAAGGCGATGGAGCGCTTCGGCGGGCACGGCAGTGTGGCAGTGCCCTGGAGCTGGCCGATCTGGAGCgccctgctgcagcagctgcggGTCCTGCTGGAGTTCGTGTACTACAGCGTCTGGACGGTTTTCCAGATATGCCGTCTGGAGGTGCACTTCAGGATTATGGACGAGCTGGCGGGGCATCGCGTCCAGCACCTGAGCGCCGATGGAAACCCCGGCCAGTCCTTCATCATATCCTCCTCATACAACTCCAACACGGGCGTCCTTGTCTCGGGTTCAGGTCCGTTATGCGCAAACGGGGCGGACAGGGCCGGGAAGCGCGACCTCTCCAGCCTGCAGGCGGAGGACCTGTGCCGCAGCCTGGTGGACGACTTTGTCTTCCGCGCTGCCGGATGCTTCGACTCGGGTCCTGCTGACAGTGATGTCCCCCGGGAAGCCACTTCCAGCTGGGAACTCAAGCACCCTAGTTTTTGGGAAGCATGTGAATTcctggaaaaaaacaccatgGATGAGGTGTGCACAGAAAGCCCAGAAGACGAACCCCTTGAAGTCACGTCGGATGATCTTATGAAAAGTCTGCCTGACTGCAAACCGATTACAGTCCAGGATTCTTTCtgggatgatgatgatgaagatgcaGACAGCAGCTGTGAAGAGTTCAAAAGCGAGGACAGCCAGGCGCTGTGGGAGTCTTTTACAAAATCGAAAGACCCTTATAACACCTTCAGCTTCTCTGCTTGCCTGTCAAGCTGCTCCCAGAAGGAAAGTGTCCAGTCAGCTCCTCACACACTGAAGCATAAAGATGAGCAACGGGACAGTTCCTCTGCCGGTGACACAGAAGGAGAATCGCAAAACAAGAGCCTCAGGATGTACTGTCTGGGCCGTTCCTGGACAGACAGTGACAGCGACTGGGAGAGTTCCAGTGAAGCCAGCGAAGGAGATCTGGAGGAAAATGAGAAGCTATGGGAGTCCTTTAATAACCCCTCTGACCCATACAATCTTCTGCACTTTACAGCTTGTCCTGTGGCTTCAAGCCCAAAGAAGACATCTCAAGAGGGTCAGAAGAAGTGTTCTGGGCGAGCTAAACAAGATCGAAATTGCTCTGAGATAGAAAGTTTAAGCTCAGACAGTGTGTTTGAGAGTCCGTCTTTATGGCAGGACATTGACTTGGAAGAAAGGCAGCACTCTGAAGACCTGTCCTCTGATTCTGAGCAGAATGATGACCTTTGGAAGTCCTTCTCACAGAGCGCGGACCCCTACCACCCTTTACATTTCCGAGCTTGCCTTGAAAGCTCTCCAACTGCGAGAAAGAAAAGTATCCATCTTAAAAATGAAGAGAGTACAGCAAACATTTCACAGAAAGTCACCTGCTCAAAGCCAGTCTTGCCAAAGAGACATTTTAAGCATTACTGTCCCAAGAGTCTTCAGGTTACCATCTGGAAGAAATCATCAAATGTGGTCCCAGAAGGGGtccaaaagaaagatgaaaaacaaatgaaaaaggtgtCGTTTTCTCCAGTAGTCCAAGTCCATGTAATGCACGCCTGGTCGTTTGCGTCGCGTGCCGCCCGCCGAGGCCCCTGGGAGGAGATGGCCCGTGACAGAGTGAGATTTCGTCGAAGAATTCAAGACATGGAGCAGGCCATTGGCTACTGCTTCAGCACAGCGCACAGGGGGAAAATGCAAGACTACTTGTCTCACAAATGTCGCACTCCACCTGCAGTTGTAGCTTGAGCTCACAATCAGAACCTGCCTCACTGGTTTGCACATTACAAAGCCATTGCACTGAGaacttatttttaagttaaattatttatatactgtacatatgtgGATTTGTATGCCTTACACATAACAATACTGTACACCATATGCATTTTGTAGTGAGCAATAATTACCACAGACTTCTATTTTCATGTTGTGTGGCTATTTTATAATCtatttttgtagattttatttttcctttatgtttttaaagcttgTATTCTGTGTGCTGCACAGCTAATATTTATAGTGTAATAGAAAAACATTGGTATTGATTGCTAATACAAGTTTTGGAaacttttttaacatttctgtaaataaataaagcacttttttaGTGAATTCAGA

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27949 lncRNA downstream 146360 9181018 ~ 9184829 (-) True G22305
TU27941 lncRNA downstream 350371 8976117 ~ 8980818 (-) True G22298
TU27939 lncRNA downstream 351115 8976117 ~ 8980074 (-) False G22298
TU27884 lncRNA downstream 640438 8690198 ~ 8690751 (-) True G22249
TU27848 lncRNA downstream 888045 8439852 ~ 8443144 (-) True G22217
TU28070 lncRNA upstream 82594 9417768 ~ 9437269 (-) True G22393
TU28077 lncRNA upstream 122618 9457792 ~ 9463337 (-) False AMCG00007267
TU28101 lncRNA upstream 263518 9598692 ~ 9599154 (-) True G22414
TU28102 lncRNA upstream 289392 9624566 ~ 9624878 (-) True G22415
TU28103 lncRNA upstream 298635 9633809 ~ 9640829 (-) True G22416
AMCG00007260 mRNA downstream 12499 9318180 ~ 9318690 (-) True AMCG00007260
AMCG00007261 mRNA downstream 97208 9188611 ~ 9233981 (-) True AMCG00007261
AMCG00007256 mRNA downstream 232583 9091932 ~ 9098606 (-) True AMCG00007256
AMCG00007255 mRNA downstream 319988 8981570 ~ 9011201 (-) True AMCG00007255
AMCG00007249 mRNA downstream 633040 8695461 ~ 8698149 (-) True AMCG00007249
AMCG00007262 mRNA upstream 553 9335727 ~ 9339155 (-) True AMCG00007262
AMCG00007259 mRNA upstream 14870 9350044 ~ 9383687 (-) True AMCG00007259
AMCG00007268 mRNA upstream 76466 9411640 ~ 9426782 (-) True AMCG00007268
AMCG00007267 mRNA upstream 122314 9457488 ~ 9462661 (-) True AMCG00007267
AMCG00007266 mRNA upstream 138719 9473893 ~ 9487688 (-) True AMCG00007266
TU27830 other downstream 934965 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 1824314 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 3317020 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 3510905 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 4273783 5056787 ~ 5057406 (-) True G21429
TU28289 other upstream 852140 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 4016343 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 4610469 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6985823 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6985863 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile