RNA id: TU28077


Basic Information

Item Value
RNA id TU28077
length 1284
lncRNA type sense_over
GC content 0.39
exon number 5
gene id AMCG00007267
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9457488 ~ 9463337 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCTTTCACACCAGACATAGGGCGGCAGATCCCATTGGTTTCAAAAGAGACGGGATTGGGCTGCGGTAGAGGTGCGGGGTTAAGAAGTGGCAGAGTAGCGAGGTGTGGCCTTCTGAAGATGTGCTGGCTGGTTTCCAGGAGATTATTGAGTCATTCTTTAAACGTTGTGACAAACTGTCCCTGAGGATTCTCAGAGTCATGGCCTGGGATTGGATGGTGACTTCTTTGTGAGCAAACACAACCAGATGAGCGGTGATAAAAACCCCACCGGCCTCAGGACCCTGTACTACCCCCCTGTGGACAGGTCCTCAGTGAAAGAGGGACAGATCCGATGTGGAGAGCATTCAGACTATGGATCCATTACGCTGCTATTTCAAAGTAGTGAGGGTGGATTACAGGTAAAGTGCTGAGCGGGAGTGTACATATCGGCACCTCCGATTCCTGGCACCGTTCTGATTAACATTGCTGACCTAATGCAGAGATGGACTTGCGATCGTTTTGTTTCTGCGaagCACAGGGTATTACTCCCAGCTGATGATGATAAGACTACAAGACAGTCTATGGCCTTCTTTGTGCACCCTGATGATGATGCAATAATTTCTTGCTTTGATGGCTCAAACAAATACCCTCCAATCAACTCTCTGGATTACCTTAATGAACGTTTTTATGCTTCTTATGGAGAGAAGTAAAATAAACTTGTGTGTTAGGCTGCCTCAGCTTTGGGACTTCCGGCTACATATCGTACCAAACAACAACATGGTACAACAGCAACGAGATTATACgtttctgtgaaaataaaatgttgtcttaTGATTGACTGATATAAATTTTCATTAATCTATAAatcttccttttctgtttttatttgcttttacttAACCTTAAAGAGAATCAAGTATTGTACAATAATTTTGACATAGAATCTTTGATGGTctctttgtattaaaaatattaattttaatatatattaatattaatggaaCAGCCAATACATACAGCACTGCATATGGAGATAATATATAGTGCCCTGCCTGTCACCCccagtttatacatttatacaatagGTTCCAAATGTAGTCGTACCTTTGATGAAGTAAAACTAAAAGTTGATTTAGCAAATAAATTTAGGTTTATTTTATCATGCAAATTAATCAAGAGATAAAGAATTGTATGACTGTCAATGTGCTAGCTTatctgtaaaaatgttttacttattttaaatacacaacgttcaaaatgtaataatactcCTACAATCAGTATTTTGTGGGTAGATTAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28070 lncRNA downstream 20523 9417768 ~ 9437269 (-) True G22393
TU27949 lncRNA downstream 272963 9181018 ~ 9184829 (-) True G22305
TU27941 lncRNA downstream 476974 8976117 ~ 8980818 (-) True G22298
TU27939 lncRNA downstream 477718 8976117 ~ 8980074 (-) False G22298
TU27884 lncRNA downstream 767041 8690198 ~ 8690751 (-) True G22249
TU28101 lncRNA upstream 135355 9598692 ~ 9599154 (-) True G22414
TU28102 lncRNA upstream 161229 9624566 ~ 9624878 (-) True G22415
TU28103 lncRNA upstream 170472 9633809 ~ 9640829 (-) True G22416
TU28210 lncRNA upstream 496725 9960062 ~ 9974326 (-) False AMCG00007282
TU28216 lncRNA upstream 569791 10033128 ~ 10042925 (-) True G22505
AMCG00007268 mRNA downstream 31010 9411640 ~ 9426782 (-) True AMCG00007268
AMCG00007259 mRNA downstream 74105 9350044 ~ 9383687 (-) True AMCG00007259
AMCG00007262 mRNA downstream 118637 9335727 ~ 9339155 (-) True AMCG00007262
AMCG00007258 mRNA downstream 122618 9331189 ~ 9335174 (-) True AMCG00007258
AMCG00007260 mRNA downstream 139102 9318180 ~ 9318690 (-) True AMCG00007260
AMCG00007266 mRNA upstream 10556 9473893 ~ 9487688 (-) True AMCG00007266
AMCG00007269 mRNA upstream 32311 9495648 ~ 9511339 (-) True AMCG00007269
AMCG00007272 mRNA upstream 181098 9644435 ~ 9683079 (-) True AMCG00007272
AMCG00007271 mRNA upstream 222769 9686106 ~ 9687263 (-) True AMCG00007271
AMCG00007273 mRNA upstream 226936 9690273 ~ 9750042 (-) True AMCG00007273
TU27830 other downstream 1061568 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 1950917 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 3443623 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 3637508 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 4400386 5056787 ~ 5057406 (-) True G21429
TU28289 other upstream 723977 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 3888180 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 4482306 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6857660 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6857700 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile