RNA id: AMCG00007269


Basic Information

Item Value
RNA id AMCG00007269
length 2244
RNA type mRNA
GC content 0.56
exon number 18
gene id AMCG00007269
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9495648 ~ 9511339 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGTCTCCCTCAGTTGTCGGTGCGGCCGGCGGGGCGGATCCCAgataattttaattaagaaactaaGCAACATCAATACGAATTAAAGCAATTTTAACCATCAGAAGTAAACATTTTCCCCCTCGTGGATATACAGAGTTAACAAGATGCCCTCAGCGACGATTGGCAACAGGACAGTGCAGTCCTCCAGTCCAGAGGTGGGATCCGCTCCGGGATCGTTGGGCCAGTTCACCATGTCGGGGCAATTTCAGTCTGGAGCCCAGACGGAGGCCATGAAGCAAGTGCTTGTTGTCATTGACAAGAAAGTCCGTaacctggaaaagaaaaagGGTAAGCTTGATGACTACCAGGCAAAAGTGAACAAGGGAGAACGCCTCAACCAAGACCAGCTGGAGGCTGTTTCCAAGTTCCAGGAAGTGGTAAATAACCTGGAGTTTGCTCGGGAACTGCAGAAGGGCTTCCTGGCATTGGGCCAAGATATCCAGAAGGCTGTGAAGAAGGCAGCCCGGCGAGAGCAGCTCCAGCGGGAAGAGGCTGAGCAGAAGCGTCTCAAATCGGTGCTGGAGCTGCAGTTCCTTCTGGACAAACTGGGCGAGGAAAGTGTCCGCAGTGAGCTGAAGCAGGGCGTGAGCGGCTCCCCGCTGCTCACGGATGAAGATCTCGCCGCCCTCGACGACTTTTACAAGCTGGTGGGGCCAGAGCGCGACCAAAACGTCAGGTTTTCTGAGCAGTATGAACAGGCAACCCTTCACTTCTGGGACTTGCTGGAGGGGAAGGAAAAGGCTGTGGCTGGCACATCATACAAAGCCCTGAAGGAGACGCTGGACAAGATTCTCCAGAGTGGCTATTTTGACAGAGCCCACCCTCACCAGAACGGAGTGTGCGAGGAAGAGGAGCAGCAGCCGATTACAGTGGAAAACTCCGAGGCAGAGGAGCAGCCAGCAGAGCCAGAAAGTGAAGCTACTGAGGAGTTCACCGAGCCCACTGAGGTGGAACCCACGGAATTCGTCAACAGGCAGTTCATTTCAGAGGCCCCTTACAGCAGCAGCGACAAAGAACAAGGAGACGAGTGGAGCACAGAATCAGAGgTTGTAGGCACTATCCAGCAACAGCAGCCTGTTCAGTCATCCCCTCCAGCACCTCCATCAGAGCCCCACACACTAAACCCCGCTGTGCCCACCCCCCCAGCTGACCCCGTTGTCAGGAAGCAGCGGGTACAGGACCTAATGGCACAGATGCAAGGACCCTACAACTTCATGCAGGATTCCATGCTTGAGTTTGATGGGCAGGCGATAGACCCTGCGATCGTGTCTGCACAGCCTATGAAGCCCTCACAGAGCCTGGACATGCCACAGATGGTTTGCCCCCCAGTTCACGCTGAATCCAGACTGACACAGCCCAACACAGTACCTGTACAACCAGAAGCCACACAAGTCCCCATGGTCTCCCCCACACCTGAAGCTTTCCCCACGACGCCACCCCTGTATCAGCCTTCACACACAGACCCCCGGCCTCAGACAGAAGCTATCGACCCCATCCAGGCCTCCATGTCTTTATCGTCAGAGCAGCCCCCTGCCGCCTCCACCCTGCCCACCGTGTCGCAGCCCCAGGTGTTCCAGGCCGTGCCCAGCAAGCCCCTCCACAGCAGTGGCATAAACGTCAACGCTGCCCCATTCCAGTCCATGCAGACGGTGTTCAATTTGAATGCCCCTGTCCCTCCTGCCAATGAGACAGACTCTCTGAAACAGCCAAACCAGTACCAGAGCAGCTACAGCCAGGGCTTCAGCAGTCAGACACCGCACCAGGTGGAGCAGCCAGAGCTTCAGCAGGAGCAGCTGCAGTCTGTGGTTGGTGCCTTCCACACCCAAGACCAAACCATCCCCACAACAGGGGGACATCAGCAGCTGTCCCAGCAGCCTCCACAGCAGGGCAGCAGTTTTGGCCGACCGGGCACATCCTTCTACAACAGCAGGGCTATGTCTCGTGGCGGGCCCAGGAACTCGCGCGGCATGCTCAACGGCTATCGGGGACCCTCCAACGGCTTCAGAGGTGGATATGACAGTTACCGCCCTCCTTTCTCCAACACTCCAAACAGCGGCTATGGACAATCCCAGTTCAGCACCCCTCGGGACTATTCCAACAGCAGCTATCAGAGGGATGGGTACCAACAGAACTACAAGCGCGGCGCTGGACAGGGGCCTCGAGGTTGTTCTCGAGGTAATGCTCAAGTGATGCGTTCCTAA

Function

GO: NA

KEGG:

id description
K18743 CAPRIN1, GPIAP1; caprin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28077 lncRNA downstream 32311 9457792 ~ 9463337 (-) False AMCG00007267
TU28070 lncRNA downstream 58379 9417768 ~ 9437269 (-) True G22393
TU27949 lncRNA downstream 310819 9181018 ~ 9184829 (-) True G22305
TU27941 lncRNA downstream 514830 8976117 ~ 8980818 (-) True G22298
TU27939 lncRNA downstream 515574 8976117 ~ 8980074 (-) False G22298
TU28101 lncRNA upstream 87353 9598692 ~ 9599154 (-) True G22414
TU28102 lncRNA upstream 113227 9624566 ~ 9624878 (-) True G22415
TU28103 lncRNA upstream 122470 9633809 ~ 9640829 (-) True G22416
TU28210 lncRNA upstream 448723 9960062 ~ 9974326 (-) False AMCG00007282
TU28216 lncRNA upstream 521789 10033128 ~ 10042925 (-) True G22505
AMCG00007266 mRNA downstream 7960 9473893 ~ 9487688 (-) True AMCG00007266
AMCG00007267 mRNA downstream 32987 9457488 ~ 9462661 (-) True AMCG00007267
AMCG00007268 mRNA downstream 68866 9411640 ~ 9426782 (-) True AMCG00007268
AMCG00007259 mRNA downstream 111961 9350044 ~ 9383687 (-) True AMCG00007259
AMCG00007262 mRNA downstream 156493 9335727 ~ 9339155 (-) True AMCG00007262
AMCG00007272 mRNA upstream 133096 9644435 ~ 9683079 (-) True AMCG00007272
AMCG00007271 mRNA upstream 174767 9686106 ~ 9687263 (-) True AMCG00007271
AMCG00007273 mRNA upstream 178934 9690273 ~ 9750042 (-) True AMCG00007273
AMCG00007274 mRNA upstream 243585 9754924 ~ 9792167 (-) True AMCG00007274
AMCG00007283 mRNA upstream 427852 9939191 ~ 9943224 (-) True AMCG00007283
TU27830 other downstream 1099424 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 1988773 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 3481479 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 3675364 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 4438242 5056787 ~ 5057406 (-) True G21429
TU28289 other upstream 675975 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 3840178 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 4434304 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6809658 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6809698 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile