RNA id: AMCG00007279


Basic Information

Item Value
RNA id AMCG00007279
length 2118
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00007279
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10025484 ~ 10031683 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATTTATACCTTCTTAGCATTTCAGCTGCTTGTGGCTTCCCAGTCTTTTCCATCCCTCCACCAGGTCTGTCCTGATCTTGTTCTTCTCTTATAGGTGTTGAAAAAAGCAACAAGCCAACATGTCGGAGAAAAAGATGTCAACTAGCCGTAAGCAGCATCTGAAGaGCTTGATGCTCCAGATTGCCAAAACAGAACTTGAGAAGGAAGAATCTGAGAGAGCAGCACAGAAAGTCAAGTACCTGGATGAGCACTGCCCTCCTCTGTCACTGGGTGGGTCCATCCAGGATTTACAGGAACTGTGCAAAAAGCTGCATGCAAAGATTGATGTGGTTGATGAGGAGAGGTACGACATGGAGAGCAAAGTGAACAAGTGTGCCAAGGAGCAAGACCTGCGTGACGTTGGGGACTGGCGTAAGAACATTGAGGAGAAGGCTGGCATGGAAGGCAGGAAGAAGATGTTCGAGGCTGAGGCCTAAACAGAGGATCGGCggcttgttgtttgtttgtaatacCTGTCATATAGGCtctccatatttttttttccccgacGGACTTTGTTTAGAGGAACAGGCTGATGTCTTAACCACGGCTGATTTGGAGCTTGCTGCCCCATTACCATCGTGTAGCTGCAAGGTGATCGATGTTGCCGTAGCATTACCAAAAACACACTGCTTTGGAAACCAGTTGTTGTgcggaaaatatattttgtcgagaaatatatttcagtgcaaaaaaataacttgtgtaaataaatgatttaaagaaagctttcattttttaagcctATGTGATCTGAGATCTGTTTTTCCCTGGTCACCTCTCTGAATCACATTTCATAGTTCTGCCAGGTGCCTTTTATAATAAGCCTTTGTTATAGTGGCAGACATTTTACAAGTGGAGAAGTCTgcattaattacagtaatagtGTGGCTTTGAATGCATTATTCATATTGAATTCCATCCAGtcattaatattacatatagCAAAGAGCTGTGTGGCATAACAAAACTCGTCTAATCCATGTTTATATTTGGATTACTTTCATCAAAGATCTGCATTACATATCCTCTCTTAAATGTGACAGTTAAAGTAGTGACAGAAATGCATCATATATCTTCTGGCATTGATAGTTGTAATTTAAAACGTTGAAGTTTATAGCATAATAGAGGATAAAGAATATAATTTATGATTAGTTTAAACAAGGATGTTCTTACTTGTGTTCACAAagtatcacattttatttacaatccCAAACCAACAATGTAACAAGGCAACAGAAAGCCGCATCCTTCCCATAATGCTCTTGGACTCCGAGACTTGGAGGGGTAGTGGTTTCCTGGGACTTGTCCTGgggactgattgactgactgaagAAGGAGAAAGAATGGGTATTATCTGATTCCACAACAAATCCACTCTGGGAATttgcattaatatacatatgGATAACAATACACCATTTCAAATACAGGTTTCCAATGTACCCTCAAGTTACTATGAGCAGATGTCAAATGCAAAAGAACCGCCAAGGACATCAGAAAGGGGCTCTGAACCGCTTTTCTTCATTTGCATGTGGCgctatacaatatacaataactgCAGTATTAGGTAACCATTTACAATGCAGTAGCAACTACTGGCAGCTGAACCctcactgtgtttttaattgaggAAAACCCAGGAAAGATTTTTTCTAAAGCCAAGCCTTGTCACTGCATTTCCATGGGATTAAAGGCACCTTTCATACACTTTAGTTGAACCCTGTTTAATGAATTACTGCAGCTAGAATACAGAAGGGATTTCATTGTTTAAACCATGaaaaacctattttaaaatatttggagGTTCTGTTTCTTAGTTACACCAGGGATATCAGTCACACGGAATGTGCATGGTCTGCATATTGCTTTGGTACCCCAGGGCTAATAAAACTACTCCGATGTAAGCGGCTGATTACCTAGTCGGGATAATGCTGTGTACCATGTGGGGATACAGGGGGCGCCATTTTCATTCAGCTCGCACCAAAACAGGAATACCTGGAATAAAGCAAAACCAACGCGGGATGGTGCATATGAATTGAAATACCTGCGTTACGaccacattcattaaaaaaca

Function

GO: NA

KEGG:

id description
K12043 TNNI2; troponin I, fast skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28210 lncRNA downstream 51158 9960062 ~ 9974326 (-) False AMCG00007282
TU28103 lncRNA downstream 384655 9633809 ~ 9640829 (-) True G22416
TU28102 lncRNA downstream 400606 9624566 ~ 9624878 (-) True G22415
TU28101 lncRNA downstream 426330 9598692 ~ 9599154 (-) True G22414
TU28077 lncRNA downstream 562147 9457792 ~ 9463337 (-) False AMCG00007267
TU28216 lncRNA upstream 1445 10033128 ~ 10042925 (-) True G22505
TU28217 lncRNA upstream 1445 10033128 ~ 10044315 (-) False G22505
TU28226 lncRNA upstream 54077 10085760 ~ 10086383 (-) True G22513
TU28293 lncRNA upstream 120797 10152480 ~ 10244225 (-) True AMCG00007299
TU28322 lncRNA upstream 234953 10266636 ~ 10272695 (-) True AMCG00007298
AMCG00007282 mRNA downstream 24319 9971096 ~ 10001165 (-) True AMCG00007282
AMCG00007283 mRNA downstream 82260 9939191 ~ 9943224 (-) True AMCG00007283
AMCG00007274 mRNA downstream 233317 9754924 ~ 9792167 (-) True AMCG00007274
AMCG00007273 mRNA downstream 275442 9690273 ~ 9750042 (-) True AMCG00007273
AMCG00007271 mRNA downstream 338221 9686106 ~ 9687263 (-) True AMCG00007271
AMCG00007280 mRNA upstream 3858 10035541 ~ 10037117 (-) True AMCG00007280
AMCG00007281 mRNA upstream 17498 10049181 ~ 10056129 (-) True AMCG00007281
AMCG00007291 mRNA upstream 59630 10091313 ~ 10096701 (-) True AMCG00007291
AMCG00007290 mRNA upstream 129769 10161452 ~ 10186176 (-) True AMCG00007290
AMCG00007289 mRNA upstream 155625 10187308 ~ 10190180 (-) True AMCG00007289
TU27830 other downstream 1629260 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 2518609 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 4011315 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4205200 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 4968078 5056787 ~ 5057406 (-) True G21429
TU28289 other upstream 155631 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 3319834 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3913960 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6289314 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6289354 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile