RNA id: AMCG00007282


Basic Information

Item Value
RNA id AMCG00007282
length 2263
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00007282
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9960062 ~ 10001165 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTTTGTGGCAAAATACACACTGCTTCCTATTGTTTCAGCCAATGCTTTTGTAAGTCTTTTGTAGGGGGGGTAGTTGCTAGTATCATCTTACTTTCCCCCAGGGAAAGTCACATGACCCAGCAGTCTGTGCTGTTTCGGGGAAGGGAGGGAAATTATGTTGAGCCAGGTTTTTAAAGCTCTCAATGAGAACCACATGCAGGATAAGGGAGGCAGGGCAGTGACTAAGTCTGCCTGGGTAAAAAGAACAAGCGCTGAAAGAATCCCTCCTGACATTTTCACCAGGCTGCACAGGAGAGAGGATCTGAGAGGAAGCCCAGAGTGAaaggaagggagacagagagagagaacaaaaaaaaaattgcagatcCTTCCCGGAAACCTTACACCGCTCTTCAGGATTGTTCAATAAGAGAGGCTCCTTTATCTCTGCTGAAACAAGAGTTTACTTTTATTCTGgactttttaataaacacagataTTTCTGAAAAATTATAAAAGATCAGCAATAGCCATGTCAAGCAGCCTCGTCAGACGAAACTCCAACAAGCAAGGTTTACAGAACCTCCTCAGACTGACTGCTCAGCGGAGCATagaggatgaggaggagatAGCGAGGGAGCGTCGGCGGAGAGCACGAGAGGAGTTCCGCAGCCACTGTGGCTCCGGGGGCTCGACCACAGACAATGGGCAGCCATCTGAGGATAACCTCTATGATTACGAGTCCAAGACTAGCTGCCAGCCTGGGCTTGAGGAAGACGAGGGCTTCAGCGACTGGACTCAGAAGCTGGAGCAACGGCGACAGAAGCGTCTCGAGGAGCAAAGCCAGAGTGAGGAGGTGTGCAGCAGTGGAGCAGCCCACAGATCAGAGGTCACGGTGAAGAGCTGGAGAGCAGCAGAGGAGTTGAAGGataaggaggaggaggatgaccAGTGGGAGAGGAACGAGAAGGAAAGGAGAGATCGAGATGAAGCCCTGCAGCGAGAGGAGAGGGtacacagagaggagagagaagaaatggagagaCTGCAGAAGGAAGAACAAAGAAAGACTGCAGCCATCAGGAAAAGAGAAAATCTGGGAAGAGAAAGGGATGATGAGGTTAAAGACAAAAAGAATGAGGTGAAGGTCTACAAATCCAGGGTCTTCCTGCAGCAGGAAGTCAGGCACAGCAACAGCAATGGAGATGCAGCTGAAGAGGAAGTGACATCACATCTTGTAAAAACTAAAAGGATAACAAGgAGCCTCAGCCAGTCGCAGGAGGCAGAGGACGAGCAGGAGGTGTTCCTGGAGACGGAGCAGAAGCTGGAGAAGATACGCCGCAGCCACCAGGAGAAAGAGAGCCAGGAGTATGAGCAGCTGAAGCAGAAGCAGGCCGAGGCTGAggtggagctggaggagctgaagcGGCGCAGGGAGGAACGACGGAGGGTCCGGGAGGAAGAGGAGCGCCAGCGGGAGCAGGATGAGCATGAGAGGCAGCTCAAGGAGGAGGAGGAGAAGAGACACATGAGGGAGGAAATTGAGAAGAGGAGGATGGAAGCTGCAGAGAAGAGACTGAAACATCTCAGCACGTCCAGTGCTGAAGGAGACGAACCCTTCAGTCCTCTCAGCCCTAAAAGCCCCACTTTTAAGAATGAGAGTGAGGAGAGAGTGACAGCAGAAAATACATACTCGATTACAGAGAGAACAGAATCTTTGAATCGATCCTTAAAGAAAAGTAACAGCATTAAGAAGACACAGCCCCCCGTGCCAATCTCCAAGATTGATGACAAGCTGGAGCAGTACGCTCACGCCATTGAGATCTCTACCAAGGAAGCCAAAGCAGCAAAACAGACTCTGATGGATATCCCAAACCCCTCTGAGCCCATCTCCTCCAAGAAGTATTTATTTGAGGCTGGAGAAGGCTGGAGCCAATGTACACCAGTGCAGTCTGCAGACACAGAAAGCCTGAAGGTTGGAGTAGCTGATCTGATTACTCAGTGGGTGAAAGGCAACCCAGACGGTAGCAGCAAGAATTCTCCCTCCAAGCCAGCTGATATTAAAGCAGGTGATGTTTTACACAAAAAGAACTTGTGGGAAACCAAAACGGACACTTCTTCTGCTAAGTCAGCGTCGACAGTGAAAGGTACCCCTTCTGGTAAAAGGTACAAGTTTGTTGTGACCGGACATGGCAAGTACGAGAAGGTTGCAGTCAGCGACAGTGATCACAATGAATTCACAAATGGGAAAGCAAGTAAGTTTTTTCAGTGACTGTAGTGTa

Function

GO: NA

KEGG:

id description
K14957 LSP1; lymphocyte-specific protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28103 lncRNA downstream 330267 9633809 ~ 9640829 (-) True G22416
TU28102 lncRNA downstream 346218 9624566 ~ 9624878 (-) True G22415
TU28101 lncRNA downstream 371942 9598692 ~ 9599154 (-) True G22414
TU28077 lncRNA downstream 507759 9457792 ~ 9463337 (-) False AMCG00007267
TU28070 lncRNA downstream 533827 9417768 ~ 9437269 (-) True G22393
TU28216 lncRNA upstream 31963 10033128 ~ 10042925 (-) True G22505
TU28217 lncRNA upstream 31963 10033128 ~ 10044315 (-) False G22505
TU28226 lncRNA upstream 84595 10085760 ~ 10086383 (-) True G22513
TU28293 lncRNA upstream 151315 10152480 ~ 10244225 (-) True AMCG00007299
TU28322 lncRNA upstream 265471 10266636 ~ 10272695 (-) True AMCG00007298
AMCG00007283 mRNA downstream 27872 9939191 ~ 9943224 (-) True AMCG00007283
AMCG00007274 mRNA downstream 178929 9754924 ~ 9792167 (-) True AMCG00007274
AMCG00007273 mRNA downstream 221054 9690273 ~ 9750042 (-) True AMCG00007273
AMCG00007271 mRNA downstream 283833 9686106 ~ 9687263 (-) True AMCG00007271
AMCG00007272 mRNA downstream 288017 9644435 ~ 9683079 (-) True AMCG00007272
AMCG00007279 mRNA upstream 24319 10025484 ~ 10031683 (-) True AMCG00007279
AMCG00007280 mRNA upstream 34376 10035541 ~ 10037117 (-) True AMCG00007280
AMCG00007281 mRNA upstream 48016 10049181 ~ 10056129 (-) True AMCG00007281
AMCG00007291 mRNA upstream 90148 10091313 ~ 10096701 (-) True AMCG00007291
AMCG00007290 mRNA upstream 160287 10161452 ~ 10186176 (-) True AMCG00007290
TU27830 other downstream 1574872 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 2464221 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 3956927 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4150812 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 4913690 5056787 ~ 5057406 (-) True G21429
TU28289 other upstream 186149 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 3350352 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3944478 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6319832 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6319872 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile