RNA id: AMCG00007283


Basic Information

Item Value
RNA id AMCG00007283
length 624
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00007283
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9939191 ~ 9943224 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACCCAGTGCACCAAAGATCCCTGATGGGGAGAAGGTGGACTTCGATGACATCCAGAAGAAACGTCAGAACAAAGACCTTATAGAGCTGCAAGGTCTGATTGATGCTCACTTTgagcacagaaagaaagaagaggaggagCTCATTGCCCTCAAAGACAGAATTGAGAAGCGTAGAACAGAGAGATCAGAGCAGCAGAGAATCAGAGCTGAGAAGGACAAGGAGCGCCAGGCGAGACGTGAGgaggagaggctgaaaagggaggaggaggaccaGAAGAAGAGAGCTGATGAAGATGCCAAGAAGAAGAAGGCTCTTACCAGCATGGGTTCTCAGTACAGCAGCTACTTGGCCAAGGCTGACCAGAAGAGAGGCAAGAAGCAgactgagagagaaaagaagaagaagatccTGGCAGACAGACGCAAGCCTCTTAACATTGATCATCTGAGTGAGGATAAACTGAAGGAGAAGGCCAAGGAGATGTGGGACTGGATGCACAGCCTGGAGTCTGATAAATTCGACTTTGGTGAGAAGCTGAAGAGACAGAAGTATGAGATTATAGCACTACGTGGCAGAGTGGAGGAGCTCAGTAAATTAAACCGCATTGATGAGCTGCAGAAG

Function

GO:

id name namespace
GO:0006942 regulation of striated muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0005861 troponin complex cellular_component

KEGG:

id description
K12046 TNNT3; troponin T, fast skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28103 lncRNA downstream 298362 9633809 ~ 9640829 (-) True G22416
TU28102 lncRNA downstream 314313 9624566 ~ 9624878 (-) True G22415
TU28101 lncRNA downstream 340037 9598692 ~ 9599154 (-) True G22414
TU28077 lncRNA downstream 475854 9457792 ~ 9463337 (-) False AMCG00007267
TU28070 lncRNA downstream 501922 9417768 ~ 9437269 (-) True G22393
TU28210 lncRNA upstream 16838 9960062 ~ 9974326 (-) False AMCG00007282
TU28216 lncRNA upstream 89904 10033128 ~ 10042925 (-) True G22505
TU28217 lncRNA upstream 89904 10033128 ~ 10044315 (-) False G22505
TU28226 lncRNA upstream 142536 10085760 ~ 10086383 (-) True G22513
TU28293 lncRNA upstream 209256 10152480 ~ 10244225 (-) True AMCG00007299
AMCG00007274 mRNA downstream 147024 9754924 ~ 9792167 (-) True AMCG00007274
AMCG00007273 mRNA downstream 189149 9690273 ~ 9750042 (-) True AMCG00007273
AMCG00007271 mRNA downstream 251928 9686106 ~ 9687263 (-) True AMCG00007271
AMCG00007272 mRNA downstream 256112 9644435 ~ 9683079 (-) True AMCG00007272
AMCG00007269 mRNA downstream 427852 9495648 ~ 9511339 (-) True AMCG00007269
AMCG00007282 mRNA upstream 27872 9971096 ~ 10001165 (-) True AMCG00007282
AMCG00007279 mRNA upstream 82260 10025484 ~ 10031683 (-) True AMCG00007279
AMCG00007280 mRNA upstream 92317 10035541 ~ 10037117 (-) True AMCG00007280
AMCG00007281 mRNA upstream 105957 10049181 ~ 10056129 (-) True AMCG00007281
AMCG00007291 mRNA upstream 148089 10091313 ~ 10096701 (-) True AMCG00007291
TU27830 other downstream 1542967 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 2432316 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 3925022 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4118907 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 4881785 5056787 ~ 5057406 (-) True G21429
TU28289 other upstream 244090 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 3408293 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 4002419 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6377773 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6377813 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile