RNA id: AMCG00007289


Basic Information

Item Value
RNA id AMCG00007289
length 2284
RNA type mRNA
GC content 0.35
exon number 3
gene id AMCG00007289
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10187308 ~ 10190204 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACTGGAATAGAGGTAAAAAAGTGGACACGTAGTCAAAATTAAGTAGTCTTTTATTTGTTAACCTAAATCATTTGATTAATCTTTATAGAAACCGAAATGTGTCTTCTTTGATAATCTTTGAAAAGTAATTGGTGACACAGTTGGTATAGAGAAGATGTGCAGTAAGGAAATACTTTTCTACTGAAACTAAGTACATCTTTACTGCGACTCTTTCATATTTTCCAACTTAACGAAATGGCTGACGATAAATGTCAAATCCGAGCTGCAATACGCAAGGGTTGCTCTGTTGATGATTGAAAACTGGAGAAAGCAGCCAACACGTTTCTTATAGGTTTGATAGTGTCCATGTAGTAAGATGGTAAACCTCTGCTTCTTTCTCGTTATGTGCTCTTGTGCCGTCATAAGGACATGGCTCTGGGGCGGTGGATGAGATGTTGGATGCCGAAAACAAGCTTTTGACCGAGAACCTAGCTACTAAAGTTTCCAGACTAAAATCgTTGGCCTTTGATATAGATAAAGACGCGGAAGAGCAGAATTCATATCTTGATGGCATGGATTCAAACTTTTTGAGTGCCACGGGCCTCCTGACCGGAAGTGTGAAGAGGTTCTCTACGATGGTTCGATCTGGAAGGGACAACCGGAAAATACTGTGCTACGTTTCAATTGGACTGGTCTTGgtttttttcttactttacTACCTGGTCTCCAGGACACAGACTTAGAAAGGCAACAGGgaaatcatattttgttaatcctCCATAGTCACTAGGACTGAAACAAATCTCAGTTATATgagaagtttaaaaacaaaatcaaaaacacttTGCTTTATTAACATTCATGATAAGTTGATGACACCCTTCGACCCCcagatatattgtttttttaatatgggaGACAAAGATTTCTGATACTGGTTTACTTCCTTTGTGCTTTTGACTTTAAACCTTGTCTTGGAAAGTAGAATTAAGTGTGTGATGTCAGAATTCTTGATAGTGGTGTTCTCTTGGGGGgtgtttattactttttttgcaCATGTGaaactttaatatatttaatatcttgAGATTTTAAGACCTGGTCGATTAAGACACTGAAGGGTTCCTGTAATGCTTATTTTTCTTTCGAGATCACCTGGATTTTTCTGGGAGGAATGCCAAATCCAAGTATATCCTTATGGTGCACAAGTGCGTCCCGGGGGGGTGGGAGTGTCAAGCTGCTTTACCTATGAGTTAAGGGGAGATGCACTGTGAAGAAGATAAGGGTTTCTTTACCCCCCTATTATAATATGCACTATGGGCAaagttgcttttaattttttttgtatttatattttccattccTGCTTCCAACTGTAGATATTTGCAGCCTTCTAGTTTACTGTAAATGATAAACTgaaacaagttttattttggtgttttttttttttgtttgtttgttttattaatgcatttgctGTTATGAATTGAAGATTATCCCAGTGTTTTCAAGTTTCATTCTGATAAAAGACACTGATGTTCTGGAGCAAACAACCCATTACCAAGAGGACATGTTCCTTAGGTTTTActttattacaataatacaaaataattcacttggttctttcattatttttatatgccTTTTCTCAAATGATAATGATTGATCACAGTTTTTTGAAATGGGATTGAAATGTTATCATTCAGTAATGTCCAGTAGGGGGTgctttgtagaaaatgtaaagatCTCTGAGCTATCTACAGGcaaatatactttattaaaatacactatCCAAATAATCAATCTACACTACCATGCTCGTACCTCTGCCAATGGTCATAGGTAATAatggtacaaaaataaaatgggaccACTGCTTTGTGAATTTGTACTTGGCAGAATAAACTTCAAGGTACATTCACTCATCTCTCTATGATATTTATTGGTTAAATATTAACTATCCCTTTTCCCAACTACATAGTcgttttaaacatacaaaacccCCACAATGGcacatgtatattaatattacatgtgTATGAGAGGGGCTAATATTCTTTTGGTAACAATAACATTGAAAAAAGACCAGACATAAAgcttttttataattttgttttgtaagattTCATAGTATCTTTCAGAGGCTAAATGTGAGGTGCCATTGAATTGAATACATGCAGACAGTAGCTGGGTGAAAGACATTGCGATTATTGATTAATCCACTGTGTAAATAAGTATATTGGTACTTTAATTAGCATatccattttaatgtattattaaggttttgtaataaaaatctTGA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08504 BET1; blocked early in transport 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28226 lncRNA downstream 100925 10085760 ~ 10086383 (-) True G22513
TU28217 lncRNA downstream 142993 10033128 ~ 10044315 (-) False G22505
TU28216 lncRNA downstream 144383 10033128 ~ 10042925 (-) True G22505
TU28210 lncRNA downstream 212982 9960062 ~ 9974326 (-) False AMCG00007282
TU28103 lncRNA downstream 546479 9633809 ~ 9640829 (-) True G22416
TU28322 lncRNA upstream 76456 10266636 ~ 10272695 (-) True AMCG00007298
TU28323 lncRNA upstream 76456 10266636 ~ 10267153 (-) False AMCG00007298
TU28372 lncRNA upstream 183559 10373739 ~ 10375219 (-) True G22619
TU28431 lncRNA upstream 356816 10546996 ~ 10578902 (-) True G22660
TU28459 lncRNA upstream 421009 10611189 ~ 10612988 (-) True G22680
AMCG00007290 mRNA downstream 1132 10161452 ~ 10186176 (-) True AMCG00007290
AMCG00007291 mRNA downstream 90607 10091313 ~ 10096701 (-) True AMCG00007291
AMCG00007281 mRNA downstream 131179 10049181 ~ 10056129 (-) True AMCG00007281
AMCG00007280 mRNA downstream 150191 10035541 ~ 10037117 (-) True AMCG00007280
AMCG00007279 mRNA downstream 155625 10025484 ~ 10031683 (-) True AMCG00007279
AMCG00007294 mRNA upstream 29135 10219315 ~ 10228702 (-) True AMCG00007294
AMCG00007299 mRNA upstream 51736 10241916 ~ 10246746 (-) False AMCG00007299
AMCG00007296 mRNA upstream 58097 10248277 ~ 10260107 (-) True AMCG00007296
AMCG00007298 mRNA upstream 74865 10265045 ~ 10272608 (-) False AMCG00007298
AMCG00007297 mRNA upstream 123411 10313591 ~ 10319631 (-) True AMCG00007297
TU27830 other downstream 1791084 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 2680433 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 4173139 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4367024 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 5129902 5056787 ~ 5057406 (-) True G21429
TU28633 other upstream 3161337 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3755463 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6130817 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6130857 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 6339994 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile