RNA id: AMCG00007295


Basic Information

Item Value
RNA id AMCG00007295
length 2046
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00007295
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10320340 ~ 10326821 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacattttatAACACAGAGCAATCGTTTTCACGGCATCTTCTTTCGTGCAAGGATACAAACGTACAGTAACTATATGCAgcttacattattattcaatgctgaccataaatacatttcccagGAGCCTCGGGTTTGGACTGCGAACACGTGCCTCGGTCACATGGGTGTCGAGACTCAAGGGGGACAGTGAACATGGCGGCGCTCACAGAGGCCCGTttcctctctctgcagctgctgctgaagCTGTAGAGTCGAGGAGGCTGATTGACAGTGCAGCGGGGAGTCTGTCGGTCACCACAGAGGAGGCTCAGCAGATTCTTGCTGTCTTTCCAGAAAGCTTCCACTCCAGCCTCAAAAACCTGCTCACCAAGATCCTGCTGGAGCACAGCCCTACCTGGAGAAATGAAGCCGTGTCTAATCAAATTTCGCTGCCTCAGTTAGTGGACATGGACTGGAGGGTGGATATCAAGACAGCCTCAGACTCCATGAACCGCATGGCAGTTCCCACCTGTCTGGTGCAGATGAAGGTGCAGGATGACCCCAGCCTGCGTGGCCCGGCTGCCCTGTCCACTGTGACTTTGGAGCTCAGCAAGGAGACTCTAGACACCATGCTGGATGGGCTGGGGAGGATACGAGACCAGCTGTCTGCTGTGGCGAGCAAATAAAGCTGGACCTGGATTCAGTATTAAGGACCTGTCCCCTTCATTAGCACATTGACTTCTGTGTGCCTAAGCGTGTTGTGCAACAGCCTTCAACTCCAGAGGAATACTAAAGGAAACTGAACTGAAGGTGTTTTGTGCTACTTGCCACTGTCATTGCTCGAACTCTGAGATGATCTACTGCCGAGGCTCCATTGACATCCTACTAGGCCTCCCCCTGCACACATCACACCCGCCTGGGACCAGGAGACTGTGTGTAGACAGTGTGTTGACCTGAGCTcatgtatttcaataaaacGGCAGGTTTAGTAACATTTCAACTAATAGTTCTGTTATTCAGAAAATGGAGCATTggtgtatatattttccatatcaACTGTTGGGTGAACTATGTATAACTAAACCTGCTAGATAAAATGCAGAACCAAAATAAATGCCCTTTTGAACGTTTCataacttttttaaaattgataatAGAAATTCGTCTGTATTTGGAGGTCAGCTAGATCTCTGTGGTCAGTGCTATAGGTTTTTggcagtttttctttattacaaTAACGGATCAAAGTAAGAACAGTCAAAAGTAAGCGAGGTCTTCACTTGTGCcagtttttgtggttttgtttctgaTCCAAAAGCTGATCTTTCTCCAGTAAAGATAGGATAATAGCATCCAAGTTGTTTTGCTTCTCAGCTGGCTCCAGTTCGTCTAAAGTTCCTCCACAGGATTGACCTTTGACACCTAAGTATTTCTGATTTAAACTTAAGCAAAATCTCAGACACCCCGTACAATAagtattgattatatttttcactagCAGTAAACTATATTTAGATAGTCTTTACTTTATACTAATAGAAATGTGTTTCTTCCAAGGTTTTGCATTTATATGATATGACATTGCATTTGTTGATTCCTttagatttaacaaaatatttgacTATATGGAGCTTCATTCGTTTTTCTTCTAACTTGAAATTTCTCTGAAGTTACTCAtgaacttttttaattttttttttttttttttaatgtccagTTTTACAAATCTGAGATTTATTTGTGTGCACAGGTTTATAGTGGGTGACTCTCTGCTCAACTGGAATGTGTAAATAGCTGTGTcatatgcacatttatttttgaataggTTGAAGTCTAAttggatattttaaaaaggacatAGAAATACATCTATACCACATTatgacaaaacataaaaaatgtagctTTGTgccttttaataaaatgtaatttaacaacATCTGTTTCTGAAACAATGTGACTCAGGAAGTGGTTCgtttagtttaattgtattgtgtgaCGTTTTGATGACCACTCTAGAAATCATTACAGTTGGAAATCAAAAGTGTACAGAATCCACAATGTAT

Function

GO: NA

KEGG:

id description
K22565 COMMD9; COMM domain containing 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28322 lncRNA downstream 47645 10266636 ~ 10272695 (-) True AMCG00007298
TU28323 lncRNA downstream 53187 10266636 ~ 10267153 (-) False AMCG00007298
TU28293 lncRNA downstream 76115 10152480 ~ 10244225 (-) True AMCG00007299
TU28226 lncRNA downstream 233957 10085760 ~ 10086383 (-) True G22513
TU28217 lncRNA downstream 276025 10033128 ~ 10044315 (-) False G22505
TU28372 lncRNA upstream 46918 10373739 ~ 10375219 (-) True G22619
TU28431 lncRNA upstream 220175 10546996 ~ 10578902 (-) True G22660
TU28459 lncRNA upstream 284368 10611189 ~ 10612988 (-) True G22680
TU28447 lncRNA upstream 301527 10628348 ~ 10631934 (-) True G22671
TU28469 lncRNA upstream 327353 10654174 ~ 10655530 (-) True G22687
AMCG00007297 mRNA downstream 709 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007298 mRNA downstream 47732 10265045 ~ 10272608 (-) False AMCG00007298
AMCG00007296 mRNA downstream 60233 10248277 ~ 10260107 (-) True AMCG00007296
AMCG00007299 mRNA downstream 73594 10241916 ~ 10246746 (-) False AMCG00007299
AMCG00007294 mRNA downstream 91638 10219315 ~ 10228702 (-) True AMCG00007294
AMCG00007302 mRNA upstream 34880 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007309 mRNA upstream 425417 10752238 ~ 10753836 (-) True AMCG00007309
AMCG00007312 mRNA upstream 1817095 12143916 ~ 12262705 (-) True AMCG00007312
AMCG00007314 mRNA upstream 1936012 12262833 ~ 12263877 (-) True AMCG00007314
AMCG00007313 mRNA upstream 1937073 12263894 ~ 12307056 (-) True AMCG00007313
TU28289 other downstream 130136 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 1924116 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 2813465 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 4306171 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4500056 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 3024696 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3618822 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 5994176 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 5994216 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 6203353 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile