RNA id: AMCG00007296


Basic Information

Item Value
RNA id AMCG00007296
length 2217
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00007296
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10248277 ~ 10260107 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTACCAGTACTCCCCTTCCCTGCAGGGGGTCGTGGACATCGGAGGGGGGCAGTTATGGCAGGGCAATGTCCgcagaaaaaaaagaagctgtTGCCATCATTACTGCTGACCCCACAGAGGAGAGCTCTCGTGATAGACAGCCATATGAAAAGCATTTCCCTAAACCAGAAACGGGAGCAGGACAACTATGCCAGGGCAGAGTGGACATGAGCCAACAGAAGCAGCCGAACAGGCCGGTTGTGCTGCAACCATTCAGTCACCCTGGAGACAACTCTTTCCAGGCACCCAGCATGTACCAGGTCTTGTATGACTTCAAAGGAGGTGCACAGATGCTGGATGTAAACAACTCTAACCAGGACCAGAtgaacacactacacactgtgcGGCAGAACCACAAACTTACCAGTCCAGAGCAGCACTATCAAACTCCCCCCCTGACTGACACTGAGGCAAACGACCCTGCTGGGAGCGGAAAAGAAGCTGTTCACCCAGTGACTTCAGCACCAGTGAGGAAGAACATAAGCGCTGCTGTCCAAACCACATGCCAGAATATACCACAGCCGTGTGTGACTGCACCTGGTCTCCCAATCTTCAGACCAGCACTCCACACCCGCCCCTGTCTGATATCCCCTCCACCCTTGATTAGTGATTATGGCTACAACACCCTATCATCATCCTACTTCCCACAGACCTGTCTCGACAGAAATCCTGAGGCGTTTAGACCAAAAATTGGCAGTGGCAAACTCGGAGGGATCAAAGGCCGACACACCAAAGGCTGCAACTGCAAACGCTCCGGCTGCCTTAAAAACTACTGTGAGTGCTATGAGGCCAAGATAATGTGTTCCTCTACCTGTAAATGCCTTGGGTGTAAGAATTACGAGGAGAGCCCTCGAAGAAAGATGAAGGTGTCAGCGAATACAAGTCTCATTAAAACATCGCCATGCCAAAAAAACAGgTATCCTCTTTCATGCATCACGCTTGGTGTAGTGAAAGCCACATGCAGTTGTCTTCTTGCTCAAGCTGAAGAAGCAGAAAAGGAAAGTTATTCTTTGCACCAAGCTGAGAAAATGATTCTCCAGGAGTATGGTCAATGTCTGACGCAAATTGTTCAGTCAATATGGAAATCTGGGACTTTGTATCCCTAGTACCATTGTGTGATACCATGATAAGCAGATCtatatgttttctgttattttgtggTAATGTTTCTTAGTCAGGACAACCTGGTTTAGATTTAATTATATGCACCTAAAAAAtctgtatcattatttttgtttcttgtcatttgaacattttacataaCCTCTACCTGAAACACTTAGTCTAGattttttgtacaaaatcttTAAGTTCTTTCAAGTAcctgaacatttcaaaatgttctaCTCTACGGATGTTAAATTACAGATTCCATTttggctttattttatatatttatttagctgTGGATGACAATTCAGGACAACATAAATGTAGTTACTTATACTACCAGTACACTACTGCATAATGTACATTAGTTATTTAAAGTGTAGGAGTGTAAATTGCTGTAAGtcttaagttatttttaataagctCTTCATAGAATATTTGAGCTGCTTTGTATAAATGATACTTCATAAACAGTGTTAGTTTGTCAGTCTATGctacataataaaacatggtTCATTACGTTGACAAATACAGAGCTCTGgcttaatttaatgtaaagcCTGTGTAATATAATCACACAAATGTATTCTGATCAGGTATGAACCTCTCATCTCTGGTCAGGATTTGGATATAGCAGAAGAAGACAGAGAAGTAAAGGGGAATTTGGCTAGGGTGCGTTTCAGTGCATCCTGGAGGAGGTGGCTGAAAGATAATTAGATGTTGGTGTCAGTGAAGATTAAGAAATGTAAGATTTAGGATTGGAGAGATCAGAAGATCTGAGCATcgtcagcatagaagtggtaggagacaCTGCCAGAGGAAAATCTTAGAACCCTGTGTTAGCTGTTTAGTGTTCAAACGTTACAGCATTAAGCCCTACTTCCAGTTAAGATAAAGATGTGGACGGAAATACGATATTATTTGGGTCAGTGGCGCCTTCTACGGGCAAAAGCTGTATTTGCACTTCTTGATTTaaccttaattatttaaaataataatacttattattaacATCAATTAAggtcttaaataataataataataataataataataataataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28293 lncRNA downstream 4052 10152480 ~ 10244225 (-) True AMCG00007299
TU28226 lncRNA downstream 161894 10085760 ~ 10086383 (-) True G22513
TU28217 lncRNA downstream 203962 10033128 ~ 10044315 (-) False G22505
TU28216 lncRNA downstream 205352 10033128 ~ 10042925 (-) True G22505
TU28210 lncRNA downstream 273951 9960062 ~ 9974326 (-) False AMCG00007282
TU28322 lncRNA upstream 6529 10266636 ~ 10272695 (-) True AMCG00007298
TU28323 lncRNA upstream 6529 10266636 ~ 10267153 (-) False AMCG00007298
TU28372 lncRNA upstream 113632 10373739 ~ 10375219 (-) True G22619
TU28431 lncRNA upstream 286889 10546996 ~ 10578902 (-) True G22660
TU28459 lncRNA upstream 351082 10611189 ~ 10612988 (-) True G22680
AMCG00007299 mRNA downstream 1531 10241916 ~ 10246746 (-) False AMCG00007299
AMCG00007294 mRNA downstream 19575 10219315 ~ 10228702 (-) True AMCG00007294
AMCG00007289 mRNA downstream 58097 10187308 ~ 10190180 (-) True AMCG00007289
AMCG00007290 mRNA downstream 62101 10161452 ~ 10186176 (-) True AMCG00007290
AMCG00007291 mRNA downstream 151576 10091313 ~ 10096701 (-) True AMCG00007291
AMCG00007298 mRNA upstream 4938 10265045 ~ 10272608 (-) False AMCG00007298
AMCG00007297 mRNA upstream 53484 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007295 mRNA upstream 60233 10320340 ~ 10326821 (-) True AMCG00007295
AMCG00007302 mRNA upstream 101594 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007309 mRNA upstream 492131 10752238 ~ 10753836 (-) True AMCG00007309
TU28289 other downstream 58073 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 1852053 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 2741402 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 4234108 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4427993 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 3091410 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3685536 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6060890 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6060930 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 6270067 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile