RNA id: TU28323


Basic Information

Item Value
RNA id TU28323
length 270
lncRNA type intronic
GC content 0.47
exon number 2
gene id AMCG00007298
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10265045 ~ 10272695 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAagactatttttgtttgtttccagatGTTGTAAATCAAAGCAGCATTGAGCAAGCAACACGAGAGGTGGAGGCCCTGCTTGGAGATGAGGGGCTGAACTGTCTGATCAACAATGCTGCGATACACCTGAATCAAACTTTGGAAGAGGCGACAGTTGAAGCCATGATGAAAACCTATGAAACCAATACAGTCTCTCCCCTTATGATAACTAAGGCGTTTTTGCCGCTGTTGAGGAAAGCAGCGAAACAGGGCACGGGAATGGGCATCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28293 lncRNA downstream 22411 10152480 ~ 10244225 (-) True AMCG00007299
TU28226 lncRNA downstream 180253 10085760 ~ 10086383 (-) True G22513
TU28217 lncRNA downstream 222321 10033128 ~ 10044315 (-) False G22505
TU28216 lncRNA downstream 223711 10033128 ~ 10042925 (-) True G22505
TU28210 lncRNA downstream 292310 9960062 ~ 9974326 (-) False AMCG00007282
TU28372 lncRNA upstream 106586 10373739 ~ 10375219 (-) True G22619
TU28431 lncRNA upstream 279843 10546996 ~ 10578902 (-) True G22660
TU28459 lncRNA upstream 344036 10611189 ~ 10612988 (-) True G22680
TU28447 lncRNA upstream 361195 10628348 ~ 10631934 (-) True G22671
TU28469 lncRNA upstream 387021 10654174 ~ 10655530 (-) True G22687
AMCG00007296 mRNA downstream 6529 10248277 ~ 10260107 (-) True AMCG00007296
AMCG00007299 mRNA downstream 19890 10241916 ~ 10246746 (-) False AMCG00007299
AMCG00007294 mRNA downstream 37934 10219315 ~ 10228702 (-) True AMCG00007294
AMCG00007289 mRNA downstream 76456 10187308 ~ 10190180 (-) True AMCG00007289
AMCG00007290 mRNA downstream 80460 10161452 ~ 10186176 (-) True AMCG00007290
AMCG00007297 mRNA upstream 46438 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007295 mRNA upstream 53187 10320340 ~ 10326821 (-) True AMCG00007295
AMCG00007302 mRNA upstream 94548 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007309 mRNA upstream 485085 10752238 ~ 10753836 (-) True AMCG00007309
AMCG00007312 mRNA upstream 1876763 12143916 ~ 12262705 (-) True AMCG00007312
TU28289 other downstream 76432 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 1870412 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 2759761 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 4252467 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4446352 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 3084364 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3678490 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6053844 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6053884 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 6263021 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile