RNA id: AMCG00007300


Basic Information

Item Value
RNA id AMCG00007300
length 4097
RNA type mRNA
GC content 0.56
exon number 25
gene id AMCG00007300
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10394165 ~ 10420911 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTCCGCCAGTGTCACATCGCTACAGTTCAgtgaacacagagagaggaacCCACCCCGCACTAGTGAGACGCACTTGCCCCTTTCCAACATGGCGGAGCTCTGGCACGCTGCCCTCGCTTTCCAGCAGGTGTAAACTTCCGCTTCCGGTAGCTAAATATTGTTGGCGGAGAAGAAAGATGGCGGATTACAAGAGGAGCGGGTTGCAGTTACAGTTATGTATCAGTGTCCCGAGACGAGTTGCATTTCTCGGGTGGgtctgtgtgcttctctgtgTGATTTTTGCCGAGCCAGGCAGTGGCACCACACACTGGATTGTGACCGAGGACGGCAAGATTCAACAGCAGGTGGATTCCCCGCTGAATTTGAAACACCCACATGACCTTGTGATTTTCATGAGACAGGAGACAAGAGTGAACTACCTCAAGGAGTTAGAGAAACAACTGGTGGCCCAGAAGATCCACATAGAAGAGAATGAGGATCGTGATACTGGGCTGGAGCAGAGGCACTATAAAGAGGATGCGGACTGCATCACTGCCAAGGTTCCTCTGGGAGACCTGGACCTCTATGATGGCACCTTCATCTCACTGGAGAGTAAAGACATTCGTCCTGAAGACTACGTGGACCCCATATCTCCACTACCTCCAGACCTGGAGAAACCAGACTGCACAAAGATCCTGGATCTTCCCTACAGTATCCATGCTTTTCAGCACCTGAGGGGCGTGCAGGAGAGAGTGAACCTGACCTCCCCCCTCTTGTCAAAGGAGGACCCCATTTTCAGCTCTCTGTCCCGGAAGCTGGGCAGGAGCATGGACGAGGTGGGACACCAGATCCACGAAGCCCTTCTGCGGAACTCCTCATCCTGGGTGCTGTATAACCTGGCCTCCTTTTACTGGCGGATGAAGAATGAACCGCGGCATGTGGTGGAGTGTGCCGTGCGGGCGCTGCACTTCTCCCCCAGGCAACATAAAGACATCGCTTTGGTGAATATGGCCAACGTGCTGCATCGCGCCCACTTCTCTGCCGACGCTGCCATCTTGATGCTGGGAGAGTATAACCATTCAGTGCTGTGCTATGACCATGCTCTGCAGGCTCAAGCAGGGTTTGAGCAGGCCTTGCGCCGCAAACACGCTGTGCTGTGTCAGCAGAAACTGGAGCAGAGATTGGAGGCCCAGCACAGGTCCCTGCAGCGCACACTGAATGAGCTGAAGGAGTACCAGAAGCAGCATGACCACTATCTGCGGCAGCAGGAGGTCCTGGACAAGCACAAGCTCATCCAGGAGGAGCAGATCCTGCGCAACATCATTCACGAGACACACATGGCAAAGGAGGCCCAGCTGGGGAATCACCAGATGTGTCGCCTGGGGAAACAGCAGCGCAGTCTGTATTGCCCCTTCGACCTGCCTGTGCGCTATCACCGCGGAGACCTGTTCGAGAGTGTGCACTACATACAGTTTGGCGAGGATGTCTCTATAGCCAACAGCATGGCTCTGAGCTCTGAGCCAGCCCTCAATCAGAGCCAAAGCCAAGAGCCTTTCCCCTCCATCTCTGGTGCCTCCTCCCTGGGCTCCTTCTGGGGCAAAGAGCCCACCTCCTTCATGGACAGTCGGGACATCCTGTGGCCCAAGAGGGCAGACTGTGCAGAGGCGTACCCCACTATGCCCCCGCCAGAGGAACTCCCAACCTACTTCCTGCCTCCAGAGAGTCGTGGCTTCGGGATCCAAAGTGAGCTGTACCAGGATGCCCCACTTGCAGCCTCCCTGCAGCCCCCAGACTGTGGCCCCGACAACCTGTCTGCCTCAGGGGGGAACACAGCCTCTTTTGGGAGGACCCTAGAGGGCAGAGAGCTCCCTGATGATCATGCCACACAGATGCTGTTCTCCCGCAGTGGCAGTCACGGCCTTAGCCAGGAGCAAATGGGAGGGCTCATCTCTCGGGCTTTGAACAAGTGGCTGCTGCTTAATGAGGCAGCGCTGTTCTGGAGAGCTAGGGGCAACGCCAGCTCCGCCCTCTCCTGTCTGCGCCATGCCCTCAACTCTGCCCCTCTGGAGCACCTCGATATCCCATTGGTGAATGCAGGCAACCTCCTGCTGCATTATGGGCTGTATCAGGAGGCAGGCCGAATCCTGGAGAATGCATTGGCCATCAACCGCTCAGAGcCTTTGACCCTCCTGAGCCTTGGGAATGTGTATGTGGCTCTGGGGAACATGAGTGGCGCGCTCGCTGTGTTTCGCCAGGCCCTATCACTCCCCTCTCGCTGCCTACAGTGTGAGAGCAACCTCAGACTCATCCGTTGTCTCCAGTTTTACCCCTTCCTGTATAACCTCACCCAGCCACCCTGCCTGGCTGGCCCCTATCGCTGCACTGAGGAGATTGAGTTTACTGAGCTGCAGTCTGAGGGGACTGATTCCCCTGGAGATGGCCATGACAAGAAGGAGGCTGAAGGGTCCAGGGATTTCCATCCCAGTGCTGTGGGAAACATCTTGCAGTTTGAGACTGTGATCGTGGACAGTAATGGCTCTGGTGAGGCCGGGCAACGCAGTGTGGGGCACATGGAAGAGGACGGCGAGGAGGAGGTAGAAGCAatggaggaggagcaggaggaggaggaagaggagtggCAGTTGAAAGAGGACCTCATGGGGGCCTTTGAGGGGGCGCTGGACGTGAAGGGGAGACGTGTGGACCTGCAGGGCATCAGGGTCCTCAAACATGGGTCGAGGAGCGGACAAGGAGGGCCCTGCTTTGGGAACTGCGAGGACGACGATGGGGCGGAGTGGCGGGCTGAGGAAGAAGGCCCACCCCCGGGAGAGCCTAGCTCCCAGTCCACACTGGAGATCAGTGGACCCAAGATCCAGTCCCCAGGACCTGCAGGAAAACGCAGGGACTACCTGAGCCTGGGCTGGCCTAGTCCGGACGAGTGCCAGCGCATCCGCCGGGTGGAGCTCACCACAGTGGCTAGCACCTGGCTGGCTGTGTCCGCAAAGAATATCGAcatCACAGAGCACATTGACTTCGCCACCCCACTGCAGGAACCCGCGGTGGAGCCCGTGTGTAACGCCAACCTCCCTGCCACTATGCACACCCTGGACCACCTGTCAGGAGTTGCCAACCGAGGCGGCATCCACTACACTGGAGAGAGCCAGCTCCGAGAGGTACTGCAGAATCTGGGCAAGGACAAATACTCACCCCAGTCATTTGAGCAAGTGGGAACACGCATTGCAAAGGTCCTGGAAAAGAACCAGACGTCCTGGGTGCTTTCCAGCATGGCAGCCCTGTACTGGAGGGTCAAGGGCCAAGGAAAGAGAGCCATTGACTGCCTGCGCCAGGCCCTCAACTATGCTCCACATTACATGAAGGATGTTCCCTTGATCAGCCTGGCTAACATATTCCACAACGCCAAGCTGTGGGAAGATGCCATTACTGTTGCCAGCATGGCAGTGGAGATTGCACCCCACTTTGTAGTCAACCACTTCACCCTTGCCAACGTTTACATCGCCATGGAGGAGTTTGAGAAGGCCATGCGCTGGTACGAGTCCACTCTCAAGCTGCAGCCCGAGTTTGCCCCGGCCAAAGACCGACTGAGGACCATACAGTGCTACCTCCTGACCAAGAAGGAGCGACGTGGCCCCTAGGACTGCCGGACAATGGGGCAGCGAAGAGGCACAGCCCCAGGCTGGGGAGGCAAGGGGAGCGGTGAGGGGGGGGCGGGGTGTTGCTTCAGGGCATATACACACATGTGGAACTAAAGTTGGTGTCCTCATTCTCATTGAAAACCACCAGAGTGGTGTATCATTGAAATAAAACACCCAGACATTTCAATTCCAGGTGTCTGCACCATGCCAGATCCAGTGTGTGCTGCAGAGCTGGAAAAAATGCTAAGAGGACTAGATTTTGGCCTGTGCCAGACCTTTAGTTTTAAAATTTGATTGGATTTTGAAAACATGCTCAACACCACTTGAGGAATCCAGATTGCATAGGGgcgaagaagaagaaaaacaacaaaaaagttttaattgaaaCGTTTGATAAATCGATGTCAGAAGCCAACTAAACAATAAAGTAGAAATTTCCCTTCTGTTTACTCATCCAAAAA

Function

GO: NA

KEGG:

id description
K24931 TTC17; tetratricopeptide repeat protein 17

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU28342 lncRNA upstream 72307 10320469 ~ 10321858 (+) True G22596
TU28244 lncRNA upstream 152757 10239589 ~ 10241408 (+) True G22528
TU28245 lncRNA upstream 152757 10239589 ~ 10241408 (+) False G22528
TU28246 lncRNA upstream 154300 10152489 ~ 10239865 (+) False G22528
TU28168 lncRNA upstream 452277 9936920 ~ 9941888 (+) False AMCG00007278
TU28422 lncRNA downstream 205763 10626674 ~ 10685068 (+) True G22652
TU28495 lncRNA downstream 690432 11111343 ~ 11111723 (+) True G22712
TU28504 lncRNA downstream 808914 11229825 ~ 11230393 (+) True G22720
TU28516 lncRNA downstream 1091242 11512153 ~ 11522358 (+) True G22730
TU28528 lncRNA downstream 1120072 11540983 ~ 11541524 (+) True G22738
AMCG00007301 mRNA upstream 10882 10373970 ~ 10383283 (+) True AMCG00007301
AMCG00007292 mRNA upstream 36560 10343702 ~ 10357605 (+) True AMCG00007292
AMCG00007293 mRNA upstream 83348 10295558 ~ 10310817 (+) True AMCG00007293
AMCG00007285 mRNA upstream 157599 10229064 ~ 10236566 (+) True AMCG00007285
AMCG00007288 mRNA upstream 178898 10202378 ~ 10215267 (+) True AMCG00007288
AMCG00007303 mRNA downstream 113246 10534157 ~ 10577164 (+) True AMCG00007303
AMCG00007304 mRNA downstream 156335 10577246 ~ 10609015 (+) True AMCG00007304
AMCG00007307 mRNA downstream 190622 10611533 ~ 10611910 (+) False AMCG00007307
AMCG00007308 mRNA downstream 207439 10628350 ~ 10654989 (+) True AMCG00007308
AMCG00007305 mRNA downstream 239270 10660181 ~ 10667295 (+) True AMCG00007305
TU28037 other upstream 894437 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 1682854 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 1997923 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 3015219 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 4813871 5565941 ~ 5580294 (+) False AMCG00007148
TU28420 other downstream 190285 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 4057762 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 4865586 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 7777857 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 7786167 18207078 ~ 18208308 (+) True G23698

Expression Profile

AMCG00007300 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

AMCG00007300 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00007300 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00068184 False 4901 mRNA 0.48 25 NC_007118.7 50295715 ~ 50349430 (-)