RNA id: AMCG00007302


Basic Information

Item Value
RNA id AMCG00007302
length 3045
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00007302
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10361701 ~ 10372947 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTAACATGTGTTGTTTATTCCAAGAACGTTTGCTTTGATGGAAAGTGCTTTCGTTTTAATCTAGAAACAGGACTGTGTTTTACAGGACGTTGATTGTCTGGCGCTTTAGTCCGGTTTGTTTGATATGTAAAGTATTTAGTTCCGTTACCGCCTTACTGCAGGCGTCCTGCACCCTTTATTTCCACCTGaaaaGTCTATGGACTGCATTGCCCAAAGCCTGACAGCCCCATAGGTGAAAGATCGAGACTTGGACAAGAATATAACTGGTTCTAACGCCAACAAGCTGACCGAGCCTTTCATCCACTCTCAAAAGGAAAAGAAGCTTATACATCTTCAGTGTGGAGGAGAAAGTCCATTTGTCAGTTCAAGATGAAACCTCAGCTATCCACTTTATGCTAAAAGTAATCATAGGTCTTCGCTAAAAATGCATATATGGTGTTGAAGCCTGAGAAGAACTTGTTCAGCTTTGATCCAAAACTGTGACAAAAATTATCATGAAACTAACACGGAACAAATTATCAACCaggtaaaataaattgaaagaaCATGCAGACTCGATTGGACATGATtgcagtgattgtgtgtgtctgaaagGAGAAACGGACATTACAATGATCAGCTTGCTTCAGCTGTGCAGGGCAGGAGTAGACGTTTGAATCCAGAAGAAGAATTCACATACATCGCTGCATTTCAAAGgCTCTAACGATGAGCCAGTGTTGTGACCTGGAGAAGGACAGCATGGACAGTGCCTGCTGCGGGGCAATGCAGACAGGCTGTGCAGCGGCGGTGGACAAAGGGGACGGCGCCCTGAGCTCTACCGAGGGTGCCAACTACCACCAGAGCCTGCAAACCACAACCCACACGCAGGGCTATGACGTTGAGTTTGACCCGCCCCTGGAGAGCAAGTACGAGTGCCCCATCTGCCTGATGGCGCTGCGGGCAGCTGTACAGACACCGTGCGGGCATCGTTTCTGCCGCGGCTGCATCGAGAAATCCATCAAAGATGCCGGTCAAAAGTGTCCCGTGGACAACGAGGTCCTTCTCGAAGACCAGCTTTTCCCAGACAATTTTGCCAAGCGAGAGATCCTCTCACTCACTGTGCGCTGCCCAAACCAGGGATGTGAGCATAAAATGGAGCTACGCCATTTGGAAACTCACGTGGCACAGTGTATGTATGCTACCGTGGACTGCCCATTGTGCCATGGTCTTGTGTGGAAGAGCCAACTGCAAGAGCATCAGAACAAGGAGTGCCCCCGCCGCACCATTACCTGCCTAAATTGTGCCTCTCCAGTGGTGTATGAGGACAACAAGtacCATGAGCTGGAGTGTCCTTTGGCGAATGTGGTGTGCGATTACTGCAGTGTGGAGATGATCCGAGACCAGATGCAGCGTAACAACCTGGCCCAGCACATGCAGGAGTACACGCAGATGCACATGCGCTATATGGCTGAGTCCCTGCGCAGTCTGAGTCTGAGTGGGAGCCTGCTGCCCACTCCGCTGGCCATGCCAAGCCCCCTGGCCCTGAGGGACACTTCGGCAGGAGCAGGGGCTGGGGTAGCTTTAGCATTAGGAGTGGGGACAGTGGGTGGATCTGCTGCCCCGCCCTGTGAGTGTGAGGAGGCCCTCCAGCATCAGCGGGAGACCATCCAGCAGCTAGAGGGGCGCTTGGTGAGGCAGGACCACCAGTTGCGAGAGCTGAGCATCAAGATGGACATGCAGAACGGGCAGGTGGGTGATCTGAAGAGGCAGGTGCGCGCGCTGGAGGAGAGCGTGCGGGAGCTGGAGGCGCAGCAGTGCAGCGGCATCTACATATGGAAGGTGGAGAACTTCTCCTCCTTTCTGCACACCCAGGAGGCCGGCCAGCCCGTGGTGATCCACAGCCCTGGCTTCTACACTGGCCGCCCTGGGTACAAGCTCTGCCTGCGCCTCCACCTGCAGACACCCACCGCCCCTCGGTGCGCCAACTACATCTCCCTCTTTGTGCACACCATGCAAGGCGAGTACGACAGCCAGCTCTCCTGGCCCTTCCAAGGAACCATCCGCCTCTCCATCCTGGACCAGATGGAGAACAACCACCACGTGGAAGTCATGGAGACCAAGCCCGACCTCCTGGCTTTCCAGCGGCCCACCATTCAGCGTAACCCCAAAGGCTTCGGCTATGTGACCTTTCTGCATCTGGCCGTGCTGAAGCAGAGGGAATTTGTCCGAGATGACACGTTGCTGGTGCGTTGTGAAGTCACCCCTCGCTTTGACATGAGCTGCATCCGGAGGGAGGGGTTCCAGCCCCGGGGCCCCGAGCCCTCAGTATAACAGTGCAAAGAGGGTGAGGTACAAGATAAGTTTTCATCAAACTTTCCAAAAAAACCTCCGGAAAAAAAAAGCCCTTGTTTTCAGTATTGACATCAGACCACTGAGAAATCAGttatttcctgtgtgtgtggtAAATGCTCTGTAGTGCTCAATACTGGGATGCATCTGATATGCAAAGAAAAGACTGAATACTTTTAAACTTCACTATGGATAACTGAGGGAATCAAtgtatctaattaaaatatgtagtaGTGGCATGgtactaattaaaaacataatctttcaatttactgagacactttttttttttttttcttttttgtccgAACTCTTGAATGTTTAATCCAAAGCCTCCTGAAAAAGGTATgttctgttgtattttaatctaGTCTGCTGCTACAGGGTACCTGGAACATGAAGCCTTACCCTTGGAATTCAGGTCTGAGCCTTCATTCAGTCCAGACTCTGTAGACAGGCAGCATCCACATATAAGCctttgaacattttcatttcaaataaacattattcatgggatttcaatttaaaagacCCTGATTTATGTTCTTTCTTACCTGTGTATGAAAGGGAACTGCCAGATAGTCTTAATCTTACATGGAAGAAATTTGCTAAAATGGCATACATTTTGGATGCTTTCACAGGTGAAACAAAGTTGTGAGCTTATCTGAAATCCAAATCATCAGAGGATTCTTACACATTCTTGTCTTTTGTTTaa

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0009615 response to virus biological_process
GO:0009617 response to bacterium biological_process
GO:0048856 anatomical structure development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0009967 positive regulation of signal transduction biological_process
GO:1902531 regulation of intracellular signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K03175 TRAF6; TNF receptor-associated factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28322 lncRNA downstream 89006 10266636 ~ 10272695 (-) True AMCG00007298
TU28323 lncRNA downstream 94548 10266636 ~ 10267153 (-) False AMCG00007298
TU28293 lncRNA downstream 117476 10152480 ~ 10244225 (-) True AMCG00007299
TU28226 lncRNA downstream 275318 10085760 ~ 10086383 (-) True G22513
TU28217 lncRNA downstream 317386 10033128 ~ 10044315 (-) False G22505
TU28372 lncRNA upstream 792 10373739 ~ 10375219 (-) True G22619
TU28431 lncRNA upstream 174049 10546996 ~ 10578902 (-) True G22660
TU28459 lncRNA upstream 238242 10611189 ~ 10612988 (-) True G22680
TU28447 lncRNA upstream 255401 10628348 ~ 10631934 (-) True G22671
TU28469 lncRNA upstream 281227 10654174 ~ 10655530 (-) True G22687
AMCG00007295 mRNA downstream 34880 10320340 ~ 10326821 (-) True AMCG00007295
AMCG00007297 mRNA downstream 42070 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007298 mRNA downstream 89093 10265045 ~ 10272608 (-) False AMCG00007298
AMCG00007296 mRNA downstream 101594 10248277 ~ 10260107 (-) True AMCG00007296
AMCG00007299 mRNA downstream 114955 10241916 ~ 10246746 (-) False AMCG00007299
AMCG00007309 mRNA upstream 379291 10752238 ~ 10753836 (-) True AMCG00007309
AMCG00007312 mRNA upstream 1770969 12143916 ~ 12262705 (-) True AMCG00007312
AMCG00007314 mRNA upstream 1889886 12262833 ~ 12263877 (-) True AMCG00007314
AMCG00007313 mRNA upstream 1890947 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007315 mRNA upstream 1944884 12317831 ~ 12319714 (-) True AMCG00007315
TU28289 other downstream 171497 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 1965477 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 2854826 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 4347532 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4541417 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 2978570 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3572696 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 5948050 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 5948090 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 6157227 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile